Difference between revisions of "13PPDH"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLYCK GLYCK] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycerate kinase * Synonym(s): ==...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/13PPDH 13PPDH] == * direction: ** REVERSIBLE * common name: ** 1,3-propanediol dehydrogenase * Syno...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLYCK GLYCK] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/13PPDH 13PPDH] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Glycerate kinase
+
** 1,3-propanediol dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[glyc__R]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[3pg]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[h]][c]
+
** 1.0 [[3hppnl]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[nadh]][c] '''<=>''' 1.0 [[13ppd]][c] '''+''' 1.0 [[nad]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 (R)-Glycerate[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 3-Phospho-D-glycerate[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 H+[c]
+
** 1.0 3-Hydroxypropanal[c] '''+''' 1.0 H+[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''<=>''' 1.0 1,3-Propanediol[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF2646]]
+
* Gene: [[EF1635]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
* [[map00640]]: [http://www.genome.jp/dbget-bin/www_bget?map00640 map00640]
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
+
** '''15''' reactions found over '''143''' reactions in the full pathway
−
* [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630]
+
−
** '''25''' reactions found over '''129''' reactions in the full pathway
+
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
−
** '''218''' reactions found over '''1054''' reactions in the full pathway
+
 
* [[map00561]]: [http://www.genome.jp/dbget-bin/www_bget?map00561 map00561]
 
* [[map00561]]: [http://www.genome.jp/dbget-bin/www_bget?map00561 map00561]
 
** '''7''' reactions found over '''83''' reactions in the full pathway
 
** '''7''' reactions found over '''83''' reactions in the full pathway
−
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 
−
** '''50''' reactions found over '''220''' reactions in the full pathway
 
−
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
 
−
** '''24''' reactions found over '''133''' reactions in the full pathway
 
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
−
** '''156''' reactions found over '''694''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
*** [[l_plantarum_wcfs1]]
+
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
 
== External links  ==
 
== External links  ==
−
* EC Number : 2.7.1.31
 
−
* BioCyc : META:GLY3KIN-RXN
 
−
* MetaNetX (MNX) Equation : MNXR100328
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23516 23516]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23188 23188]
−
* Reactome : REACT_R-BTA-6799495
+
* BioCyc : META:13-PROPANEDIOL-DEHYDROGENASE-RXN
−
* KEGG Reaction : R01514
+
* MetaNetX (MNX) Equation : MNXR94691
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* KEGG Reaction : R03119
−
{{#set: common name=Glycerate kinase}}
+
* EC Number : 1.1.1.202
−
{{#set: gene associated=EF2646}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: in pathway=map01100|map00630|map01110|map00561|map01200|map00260|map01130}}
+
{{#set: common name=1,3-propanediol dehydrogenase}}
 +
{{#set: gene associated=EF1635}}
 +
{{#set: in pathway=map00640|map00561}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 

Latest revision as of 16:37, 21 March 2018

Reaction 13PPDH

  • direction:
    • REVERSIBLE
  • common name:
    • 1,3-propanediol dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 3-Hydroxypropanal[c] + 1.0 H+[c] + 1.0 Nicotinamide adenine dinucleotide - reduced[c] <=> 1.0 1,3-Propanediol[c] + 1.0 Nicotinamide adenine dinucleotide[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:13-PROPANEDIOL-DEHYDROGENASE-RXN
  • MetaNetX (MNX) Equation : MNXR94691
  • KEGG Reaction : R03119
  • EC Number : 1.1.1.202




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