Difference between revisions of "PRAGSr"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ADPDA ADPDA] == * direction: ** REVERSIBLE * common name: ** N6 acetyl LL 2 6 diaminoheptanedioate...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PRAGSr PRAGSr] == * direction: ** REVERSIBLE * common name: ** Phosphoribosylglycinamide synthase *...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ADPDA ADPDA] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PRAGSr PRAGSr] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 
* common name:
 
* common name:
−
** N6 acetyl LL 2 6 diaminoheptanedioate amidohydrolase
+
** Phosphoribosylglycinamide synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h2o]][c] '''+''' 1.0 [[26dapime]][c] '''<=>''' 1.0 [[26dap_LL]][c] '''+''' 1.0 [[ac]][c]
+
** 1.0 [[atp]][c] '''+''' 1.0 [[gly]][c] '''+''' 1.0 [[pram]][c] '''<=>''' 1.0 [[pi]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[gar]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H2O H2O[c] '''+''' 1.0 N6 Acetyl LL 2 6 diaminopimelate C9H15N2O5[c] '''<=>''' 1.0 LL-2,6-Diaminoheptanedioate[c] '''+''' 1.0 Acetate[c]
+
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 Glycine[c] '''+''' 1.0 5-Phospho-beta-D-ribosylamine[c] '''<=>''' 1.0 Phosphate[c] '''+''' 1.0 H+[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 N1-(5-Phospho-D-ribosyl)glycinamide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1134]]
+
* Gene: [[EF1777]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 +
** '''97''' reactions found over '''298''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR95477
+
* BioCyc : META:GLYRIBONUCSYN-RXN
 +
* MetaNetX (MNX) Equation : MNXR103139
 +
* KEGG Reaction : R04144
 +
* EC Number : 6.3.4.13
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=N6 acetyl LL 2 6 diaminoheptanedioate amidohydrolase}}
+
{{#set: common name=Phosphoribosylglycinamide synthase}}
−
{{#set: gene associated=EF1134}}
+
{{#set: gene associated=EF1777}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=map01100|map01130|map01110|map00230}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=b_subtilis_subsp_subtilis_str168}}
 

Latest revision as of 15:37, 21 March 2018

Reaction PRAGSr

  • direction:
    • REVERSIBLE
  • common name:
    • Phosphoribosylglycinamide synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 ATP C10H12N5O13P3[c] + 1.0 Glycine[c] + 1.0 5-Phospho-beta-D-ribosylamine[c] <=> 1.0 Phosphate[c] + 1.0 H+[c] + 1.0 ADP C10H12N5O10P2[c] + 1.0 N1-(5-Phospho-D-ribosyl)glycinamide[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • BioCyc : META:GLYRIBONUCSYN-RXN
  • MetaNetX (MNX) Equation : MNXR103139
  • KEGG Reaction : R04144
  • EC Number : 6.3.4.13




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