Difference between revisions of "CRNDCAL2"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DDPGALA DDPGALA] == * direction: ** REVERSIBLE * common name: ** 2-dehydro-3-deoxy-6-phosphogalacto...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CRNDCAL2 CRNDCAL2] == * direction: ** LEFT-TO-RIGHT * common name: ** D-Carnitine-CoA Ligase * Syno...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/DDPGALA DDPGALA] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/CRNDCAL2 CRNDCAL2] ==
 
* direction:
 
* direction:
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** 2-dehydro-3-deoxy-6-phosphogalactonate aldolase
+
** D-Carnitine-CoA Ligase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[2dh3dgal6p]][c] '''<=>''' 1.0 [[pyr]][c] '''+''' 1.0 [[g3p]][c]
+
** 1.0 [[crn__D]][c] '''+''' 1.0 [[atp]][c] '''+''' 1.0 [[coa]][c] '''=>''' 1.0 [[adp]][c] '''+''' 1.0 [[crnDcoa]][c] '''+''' 1.0 [[pi]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 2-Dehydro-3-deoxy-D-galactonate 6-phosphate[c] '''<=>''' 1.0 Pyruvate[c] '''+''' 1.0 Glyceraldehyde 3-phosphate[c]
+
** 1.0 D-Carnitine[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 Coenzyme A[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 D-carnitinyl-CoA[c] '''+''' 1.0 Phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF0423]]
+
* Gene: [[EF0446]]
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
* [[EF2266]]
+
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
 
== Pathways  ==
 
== Pathways  ==
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''508''' reactions found over '''2349''' reactions in the full pathway
 
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
 
** '''26''' reactions found over '''69''' reactions in the full pathway
 
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 
** '''111''' reactions found over '''715''' reactions in the full pathway
 
* [[map00052]]: [http://www.genome.jp/dbget-bin/www_bget?map00052 map00052]
 
** '''17''' reactions found over '''67''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
+
* Category: [[orthology]]
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24464 24464]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30543 30543]
* BioCyc : META:DEHYDDEOXPHOSGALACT-ALDOL-RXN
+
* MetaNetX (MNX) Equation : MNXR96901
* MetaNetX (MNX) Equation : MNXR97220
+
{{#set: direction=LEFT-TO-RIGHT}}
* KEGG Reaction : R01064
+
{{#set: common name=D-Carnitine-CoA Ligase}}
* EC Number : 4.1.2.21
+
{{#set: gene associated=EF0446}}
{{#set: direction=REVERSIBLE}}
+
{{#set: in pathway=}}
{{#set: common name=2-dehydro-3-deoxy-6-phosphogalactonate aldolase}}
+
{{#set: gene associated=EF0423|EF2266}}
+
{{#set: in pathway=map01100|map00030|map01120|map00052}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
 

Latest revision as of 15:38, 21 March 2018

Reaction CRNDCAL2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • D-Carnitine-CoA Ligase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 D-Carnitine[c] + 1.0 ATP C10H12N5O13P3[c] + 1.0 Coenzyme A[c] => 1.0 ADP C10H12N5O10P2[c] + 1.0 D-carnitinyl-CoA[c] + 1.0 Phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • MetaNetX (MNX) Equation : MNXR96901