Difference between revisions of "PGGT4"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/AOXSr AOXSr] == * direction: ** REVERSIBLE * common name: ** 8-amino-7-oxononanoate synthase * Syno...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PGGT4 PGGT4] == * direction: ** LEFT-TO-RIGHT * common name: ** peptidoglycan glycosyltransferase *...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/AOXSr AOXSr] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PGGT4 PGGT4] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 8-amino-7-oxononanoate synthase
+
** peptidoglycan glycosyltransferase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h]][c] '''+''' 1.0 [[ala__L]][c] '''+''' 1.0 [[pmcoa]][c] '''<=>''' 1.0 [[8aonn]][c] '''+''' 1.0 [[coa]][c] '''+''' 1.0 [[co2]][c]
+
** 1.0 [[uaagmdalac]][c] '''=>''' 1.0 [[udcpdp]][c] '''+''' 1.0 [[PGlac2]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H+[c] '''+''' 1.0 L-Alanine[c] '''+''' 1.0 Pimeloyl-CoA[c] '''<=>''' 1.0 8-Amino-7-oxononanoate[c] '''+''' 1.0 Coenzyme A[c] '''+''' 1.0 CO2 CO2[c]
+
** 1.0 Undecaprenyl_diphospho_N_acetylmuramoyl__N_acetylglucosamine__L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_lactate[c] '''=>''' 1.0 Undecaprenyl diphosphate[c] '''+''' 1.0 peptidoglycan_with_D_lac_as_C_terminal_residue_to_form_pentadepsipeptide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[EF1148]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
* Gene: [[EF2857]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
* Gene: [[EF0991]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
* Gene: [[EF0680]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map00780]]: [http://www.genome.jp/dbget-bin/www_bget?map00780 map00780]
 
−
** '''30''' reactions found over '''67''' reactions in the full pathway
 
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 
−
** '''111''' reactions found over '''715''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[gap-filling]]:
+
* Category: [[orthology]]
−
** [[meneco]]:
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
*** [[added for gapfilling]]
+
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-curation_from_orthology]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20712 20712]
+
{{#set: common name=peptidoglycan glycosyltransferase}}
−
* EC Number : 2.3.1.47
+
{{#set: gene associated=EF1148|EF2857|EF0991|EF0680}}
−
* MetaNetX (MNX) Equation : MNXR95854
+
{{#set: in pathway=}}
−
* KEGG Reaction : R03210
+
{{#set: reconstruction category=orthology|manual}}
−
* BioCyc : META:7KAPSYN-RXN
+
{{#set: reconstruction source=manual-curation_from_orthology|orthology-l_plantarum_wcfs1}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: common name=8-amino-7-oxononanoate synthase}}
+
−
{{#set: in pathway=map01100|map00780|map01120}}
+
−
{{#set: reconstruction category=gap-filling}}
+
−
{{#set: reconstruction tool=meneco}}
+
−
{{#set: reconstruction source=added for gapfilling}}
+

Latest revision as of 15:39, 21 March 2018

Reaction PGGT4

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • peptidoglycan glycosyltransferase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Undecaprenyl_diphospho_N_acetylmuramoyl__N_acetylglucosamine__L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_lactate[c] => 1.0 Undecaprenyl diphosphate[c] + 1.0 peptidoglycan_with_D_lac_as_C_terminal_residue_to_form_pentadepsipeptide[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=PGGT4&oldid=10947"