Difference between revisions of "TDPGDH"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SUCBZL SUCBZL] == * direction: ** LEFT-TO-RIGHT * common name: ** O-succinylbenzoate-CoA ligase * S...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TDPGDH TDPGDH] == * direction: ** LEFT-TO-RIGHT * common name: ** DTDPglucose 4,6-dehydratase * Syn...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/SUCBZL SUCBZL] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/TDPGDH TDPGDH] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** O-succinylbenzoate-CoA ligase
+
** DTDPglucose 4,6-dehydratase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[coa]][c] '''+''' 1.0 [[sucbz]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[sbzcoa]][c] '''+''' 1.0 [[ppi]][c] '''+''' 1.0 [[amp]][c]
+
** 1.0 [[dtdpglu]][c] '''=>''' 1.0 [[h2o]][c] '''+''' 1.0 [[dtdp4d6dg]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Coenzyme A[c] '''+''' 1.0 O-Succinylbenzoate[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 O-Succinylbenzoyl-CoA[c] '''+''' 1.0 Diphosphate[c] '''+''' 1.0 AMP C10H12N5O7P[c]
+
** 1.0 DTDPglucose[c] '''=>''' 1.0 H2O H2O[c] '''+''' 1.0 DTDP-4-dehydro-6-deoxy-D-glucose[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0446]]
+
* Gene: [[EF2192]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
* [[map00521]]: [http://www.genome.jp/dbget-bin/www_bget?map00521 map00521]
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
+
** '''7''' reactions found over '''14''' reactions in the full pathway
−
* [[map00130]]: [http://www.genome.jp/dbget-bin/www_bget?map00130 map00130]
+
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
−
** '''9''' reactions found over '''40''' reactions in the full pathway
+
** '''135''' reactions found over '''694''' reactions in the full pathway
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
* [[map00523]]: [http://www.genome.jp/dbget-bin/www_bget?map00523 map00523]
−
** '''218''' reactions found over '''1054''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[map00525]]: [http://www.genome.jp/dbget-bin/www_bget?map00525 map00525]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[map01055]]: [http://www.genome.jp/dbget-bin/www_bget?map01055 map01055]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17009 17009]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17221 17221]
−
* BioCyc : META:O-SUCCINYLBENZOATE-COA-LIG-RXN
+
* BioCyc : META:DTDPGLUCDEHYDRAT-RXN
−
* MetaNetX (MNX) Equation : MNXR104612
+
* MetaNetX (MNX) Equation : MNXR104761
−
* KEGG Reaction : R04030
+
* KEGG Reaction : R06513
−
* EC Number : 6.2.1.26
+
* EC Number : 4.2.1.46
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=O-succinylbenzoate-CoA ligase}}
+
{{#set: common name=DTDPglucose 4,6-dehydratase}}
−
{{#set: gene associated=EF0446}}
+
{{#set: gene associated=EF2192}}
−
{{#set: in pathway=map01100|map00130|map01110}}
+
{{#set: in pathway=map00521|map01130|map00523|map00525|map01055}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=b_subtilis_subsp_subtilis_str168}}
 

Latest revision as of 15:44, 21 March 2018

Reaction TDPGDH

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • DTDPglucose 4,6-dehydratase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 DTDPglucose[c] => 1.0 H2O H2O[c] + 1.0 DTDP-4-dehydro-6-deoxy-D-glucose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:DTDPGLUCDEHYDRAT-RXN
  • MetaNetX (MNX) Equation : MNXR104761
  • KEGG Reaction : R06513
  • EC Number : 4.2.1.46




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