Difference between revisions of "TYRCBOX"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/AP5AH AP5AH] == * direction: ** LEFT-TO-RIGHT * common name: ** Ap5A hydrolase * Synonym(s): == Re...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TYRCBOX TYRCBOX] == * direction: ** LEFT-TO-RIGHT * common name: ** L-Tyrosine carboxy-lyase * Syno...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/AP5AH AP5AH] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/TYRCBOX TYRCBOX] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Ap5A hydrolase
+
** L-Tyrosine carboxy-lyase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h2o]][c] '''+''' 1.0 [[ap5a]][c] '''=>''' 1.0 [[adp]][c] '''+''' 2.0 [[h]][c] '''+''' 1.0 [[atp]][c]
+
** 1.0 [[tyr__L]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[tym]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H2O H2O[c] '''+''' 1.0 P1,P5-Bis(5'-adenosyl) pentaphosphate[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 2.0 H+[c] '''+''' 1.0 ATP C10H12N5O13P3[c]
+
** 1.0 L-Tyrosine[c] '''+''' 1.0 H+[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 Tyramine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF1311]]
 
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''98''' reactions found over '''298''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00680]]: [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680]
 +
** '''18''' reactions found over '''75''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00340]]: [http://www.genome.jp/dbget-bin/www_bget?map00340 map00340]
 +
** '''6''' reactions found over '''90''' reactions in the full pathway
 +
* [[map00965]]: [http://www.genome.jp/dbget-bin/www_bget?map00965 map00965]
 +
** '''1''' reactions found over '''14''' reactions in the full pathway
 +
* [[map00901]]: [http://www.genome.jp/dbget-bin/www_bget?map00901 map00901]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[map00950]]: [http://www.genome.jp/dbget-bin/www_bget?map00950 map00950]
 +
** '''3''' reactions found over '''33''' reactions in the full pathway
 +
* [[map00360]]: [http://www.genome.jp/dbget-bin/www_bget?map00360 map00360]
 +
** '''7''' reactions found over '''109''' reactions in the full pathway
 +
* [[map00350]]: [http://www.genome.jp/dbget-bin/www_bget?map00350 map00350]
 +
** '''9''' reactions found over '''102''' reactions in the full pathway
 +
* [[map00380]]: [http://www.genome.jp/dbget-bin/www_bget?map00380 map00380]
 +
** '''7''' reactions found over '''163''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30527 30527]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14345 14345]
−
* BioCyc : META:RXN-10966
+
* EC Number : 4.1.1.25
−
* MetaNetX (MNX) Equation : MNXR95859
+
* MetaNetX (MNX) Equation : MNXR104990
−
* KEGG Reaction : R09880
+
* KEGG Reaction : R00736
−
* EC Number : 3.6.1.61
+
* BioCyc : META:TYROSINE-DECARBOXYLASE-RXN
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Ap5A hydrolase}}
+
{{#set: common name=L-Tyrosine carboxy-lyase}}
−
{{#set: gene associated=EF1311}}
+
{{#set: in pathway=map01100|map00680|map01110|map00340|map00965|map00901|map00950|map00360|map00350|map00380}}
−
{{#set: in pathway=map00230}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
+
{{#set: reconstruction comment=added for gapfilling}}

Latest revision as of 15:45, 21 March 2018

Reaction TYRCBOX

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • L-Tyrosine carboxy-lyase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 L-Tyrosine[c] + 1.0 H+[c] => 1.0 CO2 CO2[c] + 1.0 Tyramine[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 4.1.1.25
  • MetaNetX (MNX) Equation : MNXR104990
  • KEGG Reaction : R00736
  • BioCyc : META:TYROSINE-DECARBOXYLASE-RXN




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