Difference between revisions of "Map00220"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MDDCP4ppc MDDCP4ppc] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00220 map00220] == * common_name: ** Arginine biosynthesis * Synonym(s): == Reaction(s) found ==...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/MDDCP4ppc MDDCP4ppc] ==
+
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00220 map00220] ==
−
* direction:
+
* common_name:
−
** LEFT-TO-RIGHT
+
** Arginine biosynthesis
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''9''' reactions found over '''65''' reactions in the full pathway
−
** 1.0 [[h2o]][c] '''+''' 1.0 [[murein5p4p]][c] '''=>''' 1.0 [[murein4p4p]][c] '''+''' 1.0 [[ala__D]][c]
+
* [[ACGS]]
−
* With common name(s):
+
** 0 associated gene:
−
** 1.0 H2O H2O[c] '''+''' 1.0 Two linked disacharide pentapeptide and tetrapeptide murein units (uncrosslinked, middle of chain)[c] '''=>''' 1.0 Two linked disacharide tetrapeptide murein units (uncrosslinked, middle of chain)[c] '''+''' 1.0 D-Alanine[c]
+
** 1 reconstruction source(s) associated:
−
 
+
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
== Genes associated with this reaction  ==
+
* [[ALATA_L]]
−
Genes have been associated with this reaction based on different elements listed below.
+
** 3 associated gene(s):
−
* [[EF3129]]
+
*** [[EF2372]]
−
** MANUAL
+
*** [[EF1314]]
−
== Pathways  ==
+
*** [[EF1706]]
−
== Reconstruction information  ==
+
** 1 reconstruction source(s) associated:
−
* [[manual]]:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
** [[this was a reaction occurring in the perisplasm of e. coli]]
+
* [[ASNN]]
 +
** 2 associated gene(s):
 +
*** [[EF1163]]
 +
*** [[EF1158]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[ASPTA]]
 +
** 1 associated gene(s):
 +
*** [[EF2372]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[CBMKr]]
 +
** 1 associated gene(s):
 +
*** [[EF2575]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* [[GLNS]]
 +
** 1 associated gene(s):
 +
*** [[EF2159]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[GLUDxi]]
 +
** 1 associated gene(s):
 +
*** [[EF1415]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[GLUDy]]
 +
** 1 associated gene(s):
 +
*** [[EF1415]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[OCBT]]
 +
** 1 associated gene(s):
 +
*** [[EF0105]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/3SALATAi 3SALATAi]
 +
* [http://bigg.ucsd.edu/universal/reactions/3SALATAim 3SALATAim]
 +
* [http://bigg.ucsd.edu/universal/reactions/AATC AATC]
 +
* [http://bigg.ucsd.edu/universal/reactions/AATG AATG]
 +
* [http://bigg.ucsd.edu/universal/reactions/AATGm AATGm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACGK ACGK]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACGKm ACGKm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACGSm ACGSm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACODA ACODA]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOTA ACOTA]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOTAim ACOTAim]
 +
* [http://bigg.ucsd.edu/universal/reactions/AGPR AGPR]
 +
* [http://bigg.ucsd.edu/universal/reactions/AGPRim AGPRim]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALATA_Lm ALATA_Lm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALPHNH ALPHNH]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALPHm ALPHm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ARGDI ARGDI]
 +
* [http://bigg.ucsd.edu/universal/reactions/ARGDr ARGDr]
 +
* [http://bigg.ucsd.edu/universal/reactions/ARGN ARGN]
 +
* [http://bigg.ucsd.edu/universal/reactions/ARGNm ARGNm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ARGSL ARGSL]
 +
* [http://bigg.ucsd.edu/universal/reactions/ARGSS ARGSS]
 +
* [http://bigg.ucsd.edu/universal/reactions/ARGSS_1 ARGSS_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASNNe ASNNe]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASNNm ASNNm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASNNpp ASNNpp]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPATh ASPATh]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPSE ASPSE]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPTAm ASPTAm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPTAp ASPTAp]
 +
* [http://bigg.ucsd.edu/universal/reactions/CPS CPS]
 +
* [http://bigg.ucsd.edu/universal/reactions/GALh GALh]
 +
* [http://bigg.ucsd.edu/universal/reactions/GALm GALm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GDH GDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/GDH1 GDH1]
 +
* [http://bigg.ucsd.edu/universal/reactions/GDH_nadp GDH_nadp]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLNSP1 GLNSP1]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLNSP2 GLNSP2]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLNSP3 GLNSP3]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUDym GLUDym]
 +
* [http://bigg.ucsd.edu/universal/reactions/LCYSTAT LCYSTAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/LCYSTATm LCYSTATm]
 +
* [http://bigg.ucsd.edu/universal/reactions/NOS NOS]
 +
* [http://bigg.ucsd.edu/universal/reactions/NOS1 NOS1]
 +
* [http://bigg.ucsd.edu/universal/reactions/NOS2 NOS2]
 +
* [http://bigg.ucsd.edu/universal/reactions/NOS2_1 NOS2_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/OCBTm OCBTm]
 +
* [http://bigg.ucsd.edu/universal/reactions/OCT OCT]
 +
* [http://bigg.ucsd.edu/universal/reactions/OCTh OCTh]
 +
* [http://bigg.ucsd.edu/universal/reactions/OCTm OCTm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ORNTAC ORNTAC]
 +
* [http://bigg.ucsd.edu/universal/reactions/ORNTACim ORNTACim]
 +
* [http://bigg.ucsd.edu/universal/reactions/URCB URCB]
 +
* [http://bigg.ucsd.edu/universal/reactions/URCBm URCBm]
 +
* [http://bigg.ucsd.edu/universal/reactions/UREA UREA]
 +
* [http://bigg.ucsd.edu/universal/reactions/UREASE UREASE]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: common_name=Arginine biosynthesis}}
−
{{#set: gene associated=EF3129}}
+
{{#set: reaction found=9}}
−
{{#set: in pathway=}}
+
{{#set: total reaction=65}}
−
{{#set: reconstruction category=manual}}
+
{{#set: completion rate=14.0}}
−
{{#set: reconstruction source=this was a reaction occurring in the perisplasm of e. coli}}
+

Latest revision as of 15:08, 21 March 2018

Pathway map00220

  • common_name:
    • Arginine biosynthesis
  • Synonym(s):

Reaction(s) found

9 reactions found over 65 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=Map00220&oldid=8704"