Difference between revisions of "MCTP1Bppc"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DCYTD DCYTD] == * direction: ** LEFT-TO-RIGHT * common name: ** Deoxycytidine deaminase * Synonym(s...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MCTP1Bppc MCTP1Bppc] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/DCYTD DCYTD] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/MCTP1Bppc MCTP1Bppc] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** Deoxycytidine deaminase
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h2o]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[dcyt]][c] '''=>''' 1.0 [[nh4]][c] '''+''' 1.0 [[duri]][c]
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** 1.0 [[murein5p5p]][c] '''=>''' 1.0 [[alaala]][c] '''+''' 1.0 [[murein5px3p]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H2O H2O[c] '''+''' 1.0 H+[c] '''+''' 1.0 Deoxycytidine[c] '''=>''' 1.0 Ammonium[c] '''+''' 1.0 Deoxyuridine[c]
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** 1.0 Two linked disacharide pentapeptide murein units (uncrosslinked, middle of chain)[c] '''=>''' 1.0 D-Alanyl-D-alanine[c] '''+''' 1.0 Two disacharide linked murein units, pentapeptide corsslinked tripeptide (A2pm->A2pm) (middle of chain)[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0175]]
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* Gene: [[EF1148]]
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
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** Source: [[manual-1_new_rxn_for_biomass]]
 +
* Gene: [[EF0680]]
 +
** Source: [[manual-1_new_rxn_for_biomass]]
 +
* Gene: [[EF1740]]
 +
** Source: [[manual-1_new_rxn_for_biomass]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 
−
** '''82''' reactions found over '''244''' reactions in the full pathway
 
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map00983]]: [http://www.genome.jp/dbget-bin/www_bget?map00983 map00983]
 
−
** '''22''' reactions found over '''72''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[manual]]
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** [[pantograph]]:
+
** Source: [[manual-1_new_rxn_for_biomass]]
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*** [[b_subtilis_subsp_subtilis_str168]]
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*** Comment: [[this was a reaction occurring in the perisplasm of e. coli]]
 
== External links  ==
 
== External links  ==
−
* EC Number : 3.5.4.5
 
−
* BioCyc : META:CYTIDEAM-RXN
 
−
* MetaNetX (MNX) Equation : MNXR97207
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13433 13433]
 
−
* Reactome : REACT_R-BTA-73608
 
−
* KEGG Reaction : R02485
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Deoxycytidine deaminase}}
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{{#set: gene associated=EF1148|EF0680|EF1740}}
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{{#set: gene associated=EF0175}}
+
{{#set: in pathway=}}
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{{#set: in pathway=map00240|map01100|map00983}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=manual-1_new_rxn_for_biomass}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction comment=this was a reaction occurring in the perisplasm of e. coli}}
−
{{#set: reconstruction source=b_subtilis_subsp_subtilis_str168}}
+

Latest revision as of 15:15, 21 March 2018

Reaction MCTP1Bppc

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Two linked disacharide pentapeptide murein units (uncrosslinked, middle of chain)[c] => 1.0 D-Alanyl-D-alanine[c] + 1.0 Two disacharide linked murein units, pentapeptide corsslinked tripeptide (A2pm->A2pm) (middle of chain)[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=MCTP1Bppc&oldid=9334"