Difference between revisions of "DAPDC"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLYTRS GLYTRS] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycyl-tRNA synthetase * Synonym(...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DAPDC DAPDC] == * direction: ** LEFT-TO-RIGHT * common name: ** Diaminopimelate decarboxylase * Syn...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLYTRS GLYTRS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/DAPDC DAPDC] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Glycyl-tRNA synthetase
+
** Diaminopimelate decarboxylase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[trnagly]][c] '''+''' 1.0 [[gly]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[ppi]][c] '''+''' 1.0 [[amp]][c] '''+''' 1.0 [[glytrna]][c]
+
** 1.0 [[h]][c] '''+''' 1.0 [[26dap__M]][c] '''=>''' 1.0 [[lys__L]][c] '''+''' 1.0 [[co2]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 TRNA(Gly)[c] '''+''' 1.0 Glycine[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 Diphosphate[c] '''+''' 1.0 AMP C10H12N5O7P[c] '''+''' 1.0 Glycyl-tRNA(Gly)[c]
+
** 1.0 H+[c] '''+''' 1.0 Meso-2,6-Diaminoheptanedioate[c] '''=>''' 1.0 L-Lysine[c] '''+''' 1.0 CO2 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF2407]]
+
* Gene: [[EF1504]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
* [[EF2406]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00970]]: [http://www.genome.jp/dbget-bin/www_bget?map00970 map00970]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''23''' reactions found over '''49''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00300]]: [http://www.genome.jp/dbget-bin/www_bget?map00300 map00300]
 +
** '''13''' reactions found over '''34''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 +
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 +
** '''56''' reactions found over '''228''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
*** [[l_plantarum_wcfs1]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* Reactome : REACT_R-HSA-380048
+
* RHEA:
−
* MetaNetX (MNX) Equation : MNXR100365
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15101 15101]
−
* KEGG Reaction : R03654
+
* BioCyc : META:DIAMINOPIMDECARB-RXN
−
* EC Number : 6.1.1.14
+
* MetaNetX (MNX) Equation : MNXR97141
 +
* KEGG Reaction : R00451
 +
* EC Number : 4.1.1.20
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Glycyl-tRNA synthetase}}
+
{{#set: common name=Diaminopimelate decarboxylase}}
−
{{#set: gene associated=EF2407|EF2406}}
+
{{#set: gene associated=EF1504}}
−
{{#set: in pathway=map00970}}
+
{{#set: in pathway=map01100|map01110|map00300|map01120|map01230|map01130}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1}}
 

Latest revision as of 15:19, 21 March 2018

Reaction DAPDC

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Diaminopimelate decarboxylase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H+[c] + 1.0 Meso-2,6-Diaminoheptanedioate[c] => 1.0 L-Lysine[c] + 1.0 CO2 CO2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:DIAMINOPIMDECARB-RXN
  • MetaNetX (MNX) Equation : MNXR97141
  • KEGG Reaction : R00451
  • EC Number : 4.1.1.20




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