Difference between revisions of "CBPS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RBFK RBFK] == * direction: ** LEFT-TO-RIGHT * common name: ** Riboflavin kinase * Synonym(s): == R...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CBPS CBPS] == * direction: ** LEFT-TO-RIGHT * common name: ** Carbamoyl-phosphate synthase (glutami...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/RBFK RBFK] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/CBPS CBPS] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Riboflavin kinase
+
** Carbamoyl-phosphate synthase (glutamine-hydrolysing)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[atp]][c] '''+''' 1.0 [[ribflv]][c] '''=>''' 1.0 [[h]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[fmn]][c]
+
** 2.0 [[atp]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[hco3]][c] '''+''' 1.0 [[gln__L]][c] '''=>''' 2.0 [[h]][c] '''+''' 1.0 [[glu__L]][c] '''+''' 1.0 [[cbp]][c] '''+''' 2.0 [[adp]][c] '''+''' 1.0 [[pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 Riboflavin C17H20N4O6[c] '''=>''' 1.0 H+[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 FMN C17H19N4O9P[c]
+
** 2.0 ATP C10H12N5O13P3[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 Bicarbonate[c] '''+''' 1.0 L-Glutamine[c] '''=>''' 2.0 H+[c] '''+''' 1.0 L-Glutamate[c] '''+''' 1.0 Carbamoyl phosphate[c] '''+''' 2.0 ADP C10H12N5O10P2[c] '''+''' 1.0 Phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1295]]
+
* Gene: [[EF1716]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* Gene: [[EF1717]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 +
** '''82''' reactions found over '''244''' reactions in the full pathway
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
* [[map00250]]: [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250]
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
+
** '''22''' reactions found over '''93''' reactions in the full pathway
−
* [[map00740]]: [http://www.genome.jp/dbget-bin/www_bget?map00740 map00740]
+
−
** '''5''' reactions found over '''38''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
*** [[l_plantarum_wcfs1]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14357 14357]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18633 18633]
−
* BioCyc : META:RIBOFLAVINKIN-RXN
+
* BioCyc : META:CARBPSYN-RXN
−
* MetaNetX (MNX) Equation : MNXR103429
+
* MetaNetX (MNX) Equation : MNXR96485
−
* KEGG Reaction : R00549
+
* KEGG Reaction : R00575
−
* EC Number : 2.7.1.26
+
* EC Number : 6.3.5.5
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Riboflavin kinase}}
+
{{#set: common name=Carbamoyl-phosphate synthase (glutamine-hydrolysing)}}
−
{{#set: gene associated=EF1295}}
+
{{#set: gene associated=EF1716|EF1717}}
−
{{#set: in pathway=map01100|map01110|map00740}}
+
{{#set: in pathway=map00240|map01100|map00250}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 

Latest revision as of 15:19, 21 March 2018

Reaction CBPS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Carbamoyl-phosphate synthase (glutamine-hydrolysing)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2.0 ATP C10H12N5O13P3[c] + 1.0 H2O H2O[c] + 1.0 Bicarbonate[c] + 1.0 L-Glutamine[c] => 2.0 H+[c] + 1.0 L-Glutamate[c] + 1.0 Carbamoyl phosphate[c] + 2.0 ADP C10H12N5O10P2[c] + 1.0 Phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:CARBPSYN-RXN
  • MetaNetX (MNX) Equation : MNXR96485
  • KEGG Reaction : R00575
  • EC Number : 6.3.5.5




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