Difference between revisions of "ME2"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene EF2401 == * Synonym(s): == Reactions associated == * ACYP_2 ** pantograph-l_plantarum_wcfs1 * APH120 ** pantograph-e_coli_sstr...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ME2 ME2] == * direction: ** LEFT-TO-RIGHT * common name: ** Malic enzyme (NADP) * Synonym(s): == R...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene EF2401 ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/ME2 ME2] ==
 +
* direction:
 +
** LEFT-TO-RIGHT
 +
* common name:
 +
** Malic enzyme (NADP)
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[ACYP_2]]
+
* With identifiers:
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** 1.0 [[mal__L]][c] '''+''' 1.0 [[nadp]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[pyr]][c] '''+''' 1.0 [[nadph]][c]
−
* [[APH120]]
+
* With common name(s):
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** 1.0 L-Malate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 Pyruvate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c]
−
* [[APH140]]
+
 
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
== Genes associated with this reaction  ==
−
* [[APH141]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
* Gene: [[EF1206]]
−
* [[APH160]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
* [[APH161]]
+
* Gene: [[EF3316]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
* [[APH180]]
+
== Pathways  ==
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
* [[APH181]]
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
−
== Pathways associated ==
+
** '''45''' reactions found over '''220''' reactions in the full pathway
−
* [[map00627]]
+
* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
−
* [[map01120]]
+
** '''16''' reactions found over '''71''' reactions in the full pathway
−
* [[map00620]]
+
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 +
* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
 +
** '''31''' reactions found over '''163''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
{{#set: reaction associated=ACYP_2|APH120|APH140|APH141|APH160|APH161|APH180|APH181}}
+
* RHEA:
−
{{#set: pathway associated=map00627|map01120|map00620}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18253 18253]
 +
* BioCyc : META:MALIC-NADP-RXN
 +
* MetaNetX (MNX) Equation : MNXR101443
 +
* KEGG Reaction : R00216
 +
* EC Number : 1.1.1.40
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Malic enzyme (NADP)}}
 +
{{#set: gene associated=EF1206|EF3316}}
 +
{{#set: in pathway=map01100|map01200|map00710|map01120|map00620}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:20, 21 March 2018

Reaction ME2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Malic enzyme (NADP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 L-Malate[c] + 1.0 Nicotinamide adenine dinucleotide phosphate[c] => 1.0 CO2 CO2[c] + 1.0 Pyruvate[c] + 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:MALIC-NADP-RXN
  • MetaNetX (MNX) Equation : MNXR101443
  • KEGG Reaction : R00216
  • EC Number : 1.1.1.40




Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=ME2&oldid=9715"