Difference between revisions of "URIK2"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RBK RBK] == * direction: ** LEFT-TO-RIGHT * common name: ** Ribokinase * Synonym(s): == Reaction F...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/URIK2 URIK2] == * direction: ** LEFT-TO-RIGHT * common name: ** Uridine kinase (GTP:Uridine) * Syno...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/RBK RBK] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/URIK2 URIK2] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Ribokinase
+
** Uridine kinase (GTP:Uridine)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[rib__D]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[adp]][c] '''+''' 1.0 [[r5p]][c] '''+''' 1.0 [[h]][c]
+
** 1.0 [[uri]][c] '''+''' 1.0 [[gtp]][c] '''=>''' 1.0 [[ump]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[gdp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 D-Ribose[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 Alpha-D-Ribose 5-phosphate[c] '''+''' 1.0 H+[c]
+
** 1.0 Uridine[c] '''+''' 1.0 GTP C10H12N5O14P3[c] '''=>''' 1.0 UMP C9H11N2O9P[c] '''+''' 1.0 H+[c] '''+''' 1.0 GDP C10H12N5O11P2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF2961]]
+
* Gene: [[EF0825]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''26''' reactions found over '''69''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 +
** '''82''' reactions found over '''244''' reactions in the full pathway
 +
* [[map00983]]: [http://www.genome.jp/dbget-bin/www_bget?map00983 map00983]
 +
** '''22''' reactions found over '''72''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
*** [[l_plantarum_wcfs1]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR103431
+
* RHEA:
−
* EC Number : 2.7.1.15
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27650 27650]
 +
* BioCyc : META:URKI-RXN
 +
* MetaNetX (MNX) Equation : MNXR105163
 +
* KEGG Reaction : R00968
 +
* EC Number : 2.7.1.48
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Ribokinase}}
+
{{#set: common name=Uridine kinase (GTP:Uridine)}}
−
{{#set: gene associated=EF2961}}
+
{{#set: gene associated=EF0825}}
−
{{#set: in pathway=map00030}}
+
{{#set: in pathway=map01100|map00240|map00983}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 

Latest revision as of 15:26, 21 March 2018

Reaction URIK2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Uridine kinase (GTP:Uridine)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Uridine[c] + 1.0 GTP C10H12N5O14P3[c] => 1.0 UMP C9H11N2O9P[c] + 1.0 H+[c] + 1.0 GDP C10H12N5O11P2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:URKI-RXN
  • MetaNetX (MNX) Equation : MNXR105163
  • KEGG Reaction : R00968
  • EC Number : 2.7.1.48




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