Difference between revisions of "SDPDS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/AICART AICART] == * direction: ** REVERSIBLE * common name: ** Phosphoribosylaminoimidazolecarboxam...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SDPDS SDPDS] == * direction: ** LEFT-TO-RIGHT * common name: ** Succinyl-diaminopimelate desuccinyl...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/AICART AICART] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/SDPDS SDPDS] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Phosphoribosylaminoimidazolecarboxamide formyltransferase
+
** Succinyl-diaminopimelate desuccinylase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[aicar]][c] '''+''' 1.0 [[10fthf]][c] '''<=>''' 1.0 [[thf]][c] '''+''' 1.0 [[fprica]][c]
+
** 1.0 [[h2o]][c] '''+''' 1.0 [[sl26da]][c] '''=>''' 1.0 [[26dap_LL]][c] '''+''' 1.0 [[succ]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 5-Amino-1-(5-Phospho-D-ribosyl)imidazole-4-carboxamide[c] '''+''' 1.0 10-Formyltetrahydrofolate[c] '''<=>''' 1.0 5,6,7,8-Tetrahydrofolate[c] '''+''' 1.0 5-Formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide[c]
+
** 1.0 H2O H2O[c] '''+''' 1.0 N-Succinyl-LL-2,6-diaminoheptanedioate[c] '''=>''' 1.0 LL-2,6-Diaminoheptanedioate[c] '''+''' 1.0 Succinate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1778]]
+
* Gene: [[EF3178]]
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
−
** '''135''' reactions found over '''694''' reactions in the full pathway
+
** '''56''' reactions found over '''228''' reactions in the full pathway
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
+
** '''104''' reactions found over '''715''' reactions in the full pathway
−
* [[map00670]]: [http://www.genome.jp/dbget-bin/www_bget?map00670 map00670]
+
* [[map00300]]: [http://www.genome.jp/dbget-bin/www_bget?map00300 map00300]
−
** '''14''' reactions found over '''65''' reactions in the full pathway
+
** '''13''' reactions found over '''34''' reactions in the full pathway
−
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
+
−
** '''97''' reactions found over '''298''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
*** [[l_plantarum_wcfs1]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22192 22192]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22608 22608]
−
* Reactome : REACT_R-ATH-73798
+
* BioCyc : META:SUCCDIAMINOPIMDESUCC-RXN
−
* MetaNetX (MNX) Equation : MNXR95639
+
* MetaNetX (MNX) Equation : MNXR104300
−
* KEGG Reaction : R04560
+
* KEGG Reaction : R02734
−
* EC Number : 2.1.2.3
+
* EC Number : 3.5.1.18
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Phosphoribosylaminoimidazolecarboxamide formyltransferase}}
+
{{#set: common name=Succinyl-diaminopimelate desuccinylase}}
−
{{#set: gene associated=EF1778}}
+
{{#set: gene associated=EF3178}}
−
{{#set: in pathway=map01100|map01130|map01110|map00670|map00230}}
+
{{#set: in pathway=map01100|map01230|map01120|map00300}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 

Latest revision as of 15:29, 21 March 2018

Reaction SDPDS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Succinyl-diaminopimelate desuccinylase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O H2O[c] + 1.0 N-Succinyl-LL-2,6-diaminoheptanedioate[c] => 1.0 LL-2,6-Diaminoheptanedioate[c] + 1.0 Succinate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:SUCCDIAMINOPIMDESUCC-RXN
  • MetaNetX (MNX) Equation : MNXR104300
  • KEGG Reaction : R02734
  • EC Number : 3.5.1.18




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