Difference between revisions of "RMK"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MALT MALT] == * direction: ** LEFT-TO-RIGHT * common name: ** Alpha glucosidase * Synonym(s): == R...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RMK RMK] == * direction: ** LEFT-TO-RIGHT * common name: ** Rhamnulokinase * Synonym(s): == Reacti...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/MALT MALT] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/RMK RMK] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** Alpha glucosidase
+
** Rhamnulokinase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[malt]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 2.0 [[glc__D]][c]
+
** 1.0 [[atp]][c] '''+''' 1.0 [[rml]][c] '''=>''' 1.0 [[adp]][c] '''+''' 1.0 [[rml1p]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 Maltose C12H22O11[c] '''+''' 1.0 H2O H2O[c] '''=>''' 2.0 D-Glucose[c]
+
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 L-Rhamnulose[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 L-Rhamnulose 1-phosphate[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF1348]]
+
* Gene: [[EF0433]]
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map00040]]: [http://www.genome.jp/dbget-bin/www_bget?map00040 map00040]
 +
** '''15''' reactions found over '''54''' reactions in the full pathway
 +
* [[map00051]]: [http://www.genome.jp/dbget-bin/www_bget?map00051 map00051]
 +
** '''22''' reactions found over '''63''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
+
* Category: [[orthology]]
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
* BioCyc : META:RXN-15910
+
* RHEA:
* MetaNetX (MNX) Equation : MNXR101350
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20117 20117]
* KEGG Reaction : R00028
+
* MetaNetX (MNX) Equation : MNXR104039
* EC Number : 3.2.1.20
+
* KEGG Reaction : R03014
 +
* EC Number : 2.7.1.5
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=Alpha glucosidase}}
+
{{#set: common name=Rhamnulokinase}}
{{#set: gene associated=EF1348}}
+
{{#set: gene associated=EF0433}}
{{#set: in pathway=}}
+
{{#set: in pathway=map00040|map00051|map01120}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
{{#set: reconstruction source=b_subtilis_subsp_subtilis_str168}}
 

Latest revision as of 15:29, 21 March 2018

Reaction RMK

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Rhamnulokinase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 ATP C10H12N5O13P3[c] + 1.0 L-Rhamnulose[c] => 1.0 ADP C10H12N5O10P2[c] + 1.0 L-Rhamnulose 1-phosphate[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • MetaNetX (MNX) Equation : MNXR104039
  • KEGG Reaction : R03014
  • EC Number : 2.7.1.5