Difference between revisions of "SPMDabc"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/FAS140 FAS140] == * direction: ** LEFT-TO-RIGHT * common name: ** Fatty acid synthase n C140 * Sy...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SPMDabc SPMDabc] == * direction: ** LEFT-TO-RIGHT * common name: ** Spermidine transport via ABC sy...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/FAS140 FAS140] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/SPMDabc SPMDabc] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Fatty acid synthase  n C140
+
** Spermidine transport via ABC system
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2.0 [[nadph]][c] '''+''' 1.0 [[ddca]][c] '''+''' 1.0 [[malcoa]][c] '''+''' 3.0 [[h]][c] '''=>''' 2.0 [[nadp]][c] '''+''' 1.0 [[coa]][c] '''+''' 1.0 [[co2]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[ttdca]][c]
+
** 1.0 [[atp]][c] '''+''' 1.0 [[spmd]][e] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[adp]][c] '''+''' 1.0 [[spmd]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 1.0 Dodecanoate (n-C12:0)[c] '''+''' 1.0 Malonyl CoA C24H33N7O19P3S[c] '''+''' 3.0 H+[c] '''=>''' 2.0 Nicotinamide adenine dinucleotide phosphate[c] '''+''' 1.0 Coenzyme A[c] '''+''' 1.0 CO2 CO2[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 Tetradecanoate (n-C14:0)[c]
+
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 Spermidine[e] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 Spermidine[c] '''+''' 1.0 H+[c] '''+''' 1.0 Phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[EF2651]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
* Gene: [[EF2650]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
* Gene: [[EF2652]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
* Gene: [[EF2649]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map00061]]: [http://www.genome.jp/dbget-bin/www_bget?map00061 map00061]
 
−
** '''65''' reactions found over '''160''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[gap-filling]]:
+
* Category: [[orthology]]
−
** [[meneco]]:
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
*** [[added for gapfilling]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR99390
+
* RHEA:
−
* EC Number : 2.3.1.85
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29999#1 29999#1]
 +
* MetaNetX (MNX) Equation : MNXR104494
 +
* EC Number : 3.6.3.31
 +
* BioCyc : META:ABC-24-RXN
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Fatty acid synthase  n C140 }}
+
{{#set: common name=Spermidine transport via ABC system}}
−
{{#set: in pathway=map01100|map00061}}
+
{{#set: gene associated=EF2651|EF2650|EF2652|EF2649}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=added for gapfilling}}
+
{{#set: reconstruction source=orthology-l_plantarum_wcfs1}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:30, 21 March 2018

Reaction SPMDabc

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Spermidine transport via ABC system
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 ATP C10H12N5O13P3[c] + 1.0 Spermidine[e] + 1.0 H2O H2O[c] => 1.0 ADP C10H12N5O10P2[c] + 1.0 Spermidine[c] + 1.0 H+[c] + 1.0 Phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • MetaNetX (MNX) Equation : MNXR104494
  • EC Number : 3.6.3.31
  • BioCyc : META:ABC-24-RXN




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