Difference between revisions of "Tcggrpp"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SERD_L SERD_L] == * direction: ** LEFT-TO-RIGHT * common name: ** L-serine deaminase * Synonym(s):...")
(Created page with "Category:Metabolite == Metabolite [http://bigg.ucsd.edu/universal/metabolites/tcggrpp tcggrpp] == * common name: ** Trans trans cis Geranylgeranyl pyrophosphate C20H33O7P2...")
 
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[[Category:Reaction]]
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[[Category:Metabolite]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/SERD_L SERD_L] ==
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== Metabolite [http://bigg.ucsd.edu/universal/metabolites/tcggrpp tcggrpp] ==
* direction:
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** LEFT-TO-RIGHT
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* common name:
 
* common name:
** L-serine deaminase
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** Trans trans cis Geranylgeranyl pyrophosphate C20H33O7P2
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
* With identifiers:
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* [[IPDPUPT]]
** 1.0 [[ser__L]][c] '''=>''' 1.0 [[nh4]][c] '''+''' 1.0 [[pyr]][c]
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== Reaction(s) known to produce the compound ==
* With common name(s):
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== Reaction(s) of unknown directionality ==
** 1.0 L-Serine[c] '''=>''' 1.0 Ammonium[c] '''+''' 1.0 Pyruvate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[EF0099]]
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** [[pantograph]]-[[l_plantarum_wcfs1]]
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
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* [[EF2721]]
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
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* [[EF0098]]
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** [[pantograph]]-[[l_plantarum_wcfs1]]
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* [[EF2722]]
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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== Pathways  ==
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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** '''460''' reactions found over '''2349''' reactions in the full pathway
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* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
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** '''135''' reactions found over '''694''' reactions in the full pathway
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
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** '''179''' reactions found over '''1054''' reactions in the full pathway
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* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
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** '''23''' reactions found over '''133''' reactions in the full pathway
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* [[map00290]]: [http://www.genome.jp/dbget-bin/www_bget?map00290 map00290]
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** '''9''' reactions found over '''49''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[e_coli_sstr_k12_substr_mg1655]]
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*** [[l_plantarum_wcfs1]]
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*** [[b_subtilis_subsp_subtilis_str168]]
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== External links  ==
 
== External links  ==
* RHEA:
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{{#set: common name=Trans trans cis Geranylgeranyl pyrophosphate C20H33O7P2}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19169 19169]
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{{#set: consumed by=IPDPUPT}}
* BioCyc : META:4.3.1.17-RXN
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* MetaNetX (MNX) Equation : MNXR104339
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* KEGG Reaction : R00220
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* EC Number : 4.3.1.15
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=L-serine deaminase}}
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{{#set: gene associated=EF0099|EF2721|EF0098|EF2722}}
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{{#set: in pathway=map01100|map01130|map01110|map00260|map00290}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
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Latest revision as of 15:36, 21 March 2018

Metabolite tcggrpp

  • common name:
    • Trans trans cis Geranylgeranyl pyrophosphate C20H33O7P2
  • Synonym(s):

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links