Difference between revisions of "MDDCP1ppc"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK4 NDPK4] == * direction: ** REVERSIBLE * common name: ** Nucleoside-diphosphate kinase (ATP:dTD...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MDDCP1ppc MDDCP1ppc] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK4 NDPK4] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/MDDCP1ppc MDDCP1ppc] ==
 
* direction:
 
* direction:
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** REVERSIBLE
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** LEFT-TO-RIGHT
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* common name:
+
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** Nucleoside-diphosphate kinase (ATP:dTDP)
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* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
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** 1.0 [[atp]][c] '''+''' 1.0 [[dtdp]][c] '''<=>''' 1.0 [[adp]][c] '''+''' 1.0 [[dttp]][c]
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** 1.0 [[murein5px4p]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[murein4px4p]][c] '''+''' 1.0 [[ala__D]][c]
 
* With common name(s):
 
* With common name(s):
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** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 DTDP C10H13N2O11P2[c] '''<=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 DTTP C10H13N2O14P3[c]
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** 1.0 Two disacharide linked murein units, pentapeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Two disacharide linked murein units, tetrapeptide corsslinked tetrapeptide (A2pm->D-ala) (middle of chain)[c] '''+''' 1.0 D-Alanine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
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* [[EF1036]]
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* Gene: [[EF3129]]
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** [[pantograph]]-[[l_plantarum_wcfs1]]
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** Source: [[manual-1_new_rxn_for_biomass]]
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** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
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−
* [[EF0228]]
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−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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== Pathways  ==
 
== Pathways  ==
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
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* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 
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** '''82''' reactions found over '''244''' reactions in the full pathway
 
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
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** '''179''' reactions found over '''1054''' reactions in the full pathway
 
−
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 
−
** '''97''' reactions found over '''298''' reactions in the full pathway
 
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
−
** '''135''' reactions found over '''694''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
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* Category: [[manual]]
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** [[pantograph]]:
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** Source: [[manual-1_new_rxn_for_biomass]]
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*** [[e_coli_sstr_k12_substr_mg1655]]
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*** Comment: [[this was a reaction occurring in the perisplasm of e. coli]]
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*** [[l_plantarum_wcfs1]]
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−
*** [[b_subtilis_subsp_subtilis_str168]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27682 27682]
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{{#set: gene associated=EF3129}}
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* BioCyc : META:DTDPKIN-RXN
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{{#set: in pathway=}}
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* MetaNetX (MNX) Equation : MNXR101937
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{{#set: reconstruction category=manual}}
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* KEGG Reaction : R02093
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{{#set: reconstruction source=manual-1_new_rxn_for_biomass}}
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* EC Number : 2.7.4.6
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{{#set: reconstruction comment=this was a reaction occurring in the perisplasm of e. coli}}
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{{#set: direction=REVERSIBLE}}
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−
{{#set: common name=Nucleoside-diphosphate kinase (ATP:dTDP)}}
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−
{{#set: gene associated=EF1036|EF0228}}
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−
{{#set: in pathway=map01100|map00240|map01110|map00230|map01130}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
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Latest revision as of 15:39, 21 March 2018

Reaction MDDCP1ppc

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Two disacharide linked murein units, pentapeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)[c] + 1.0 H2O H2O[c] => 1.0 Two disacharide linked murein units, tetrapeptide corsslinked tetrapeptide (A2pm->D-ala) (middle of chain)[c] + 1.0 D-Alanine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

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