Difference between revisions of "UGMDDS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/E4PD E4PD] == * direction: ** REVERSIBLE * common name: ** Erythrose 4-phosphate dehydrogenase * Sy...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/UGMDDS UGMDDS] == * direction: ** LEFT-TO-RIGHT * common name: ** UDP-N-acetylmuramoyl-L-alanyl-D-g...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/E4PD E4PD] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/UGMDDS UGMDDS] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Erythrose 4-phosphate dehydrogenase
+
** UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine synthetase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h2o]][c] '''+''' 1.0 [[e4p]][c] '''+''' 1.0 [[nad]][c] '''<=>''' 1.0 [[nadh]][c] '''+''' 2.0 [[h]][c] '''+''' 1.0 [[4per]][c]
+
** 1.0 [[ugmd]][c] '''+''' 1.0 [[atp]][c] '''+''' 1.0 [[alaala]][c] '''=>''' 1.0 [[pi]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[ugmda]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H2O H2O[c] '''+''' 1.0 D-Erythrose 4-phosphate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''<=>''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 2.0 H+[c] '''+''' 1.0 4-Phospho-D-erythronate[c]
+
** 1.0 UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 D-Alanyl-D-alanine[c] '''=>''' 1.0 Phosphate[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1964]]
+
* Gene: [[EF0845]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
* [[EF1526]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00750]]: [http://www.genome.jp/dbget-bin/www_bget?map00750 map00750]
+
* [[map00550]]: [http://www.genome.jp/dbget-bin/www_bget?map00550 map00550]
−
** '''2''' reactions found over '''25''' reactions in the full pathway
+
** '''10''' reactions found over '''27''' reactions in the full pathway
 +
* [[map00300]]: [http://www.genome.jp/dbget-bin/www_bget?map00300 map00300]
 +
** '''13''' reactions found over '''34''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* MetaNetX (MNX) Equation : MNXR105094
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12056 12056]
+
* EC Number : 6.3.2.10
−
* BioCyc : META:ERYTH4PDEHYDROG-RXN
+
{{#set: direction=LEFT-TO-RIGHT}}
−
* MetaNetX (MNX) Equation : MNXR97842
+
{{#set: common name=UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine synthetase}}
−
* KEGG Reaction : R01825
+
{{#set: gene associated=EF0845}}
−
* EC Number : 1.2.1.72
+
{{#set: in pathway=map01100|map00550|map00300}}
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=Erythrose 4-phosphate dehydrogenase}}
+
−
{{#set: gene associated=EF1964|EF1526}}
+
−
{{#set: in pathway=map01100|map00750}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
 

Latest revision as of 15:45, 21 March 2018

Reaction UGMDDS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine synthetase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate[c] + 1.0 ATP C10H12N5O13P3[c] + 1.0 D-Alanyl-D-alanine[c] => 1.0 Phosphate[c] + 1.0 ADP C10H12N5O10P2[c] + 1.0 UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR105094
  • EC Number : 6.3.2.10




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