Difference between revisions of "EHGLAT"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270] == * common_name: ** Cysteine and methionine metabolism * Synonym(s): == Reaction(...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/EHGLAT EHGLAT] == * direction: ** LEFT-TO-RIGHT * common name: ** L erythro 4 Hydroxyglutamate2 oxo...")
 
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/EHGLAT EHGLAT] ==
−
* common_name:
+
* direction:
−
** Cysteine and methionine metabolism
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** L erythro 4 Hydroxyglutamate2 oxoglutarate aminotransferase
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''25''' reactions found over '''135''' reactions in the full pathway
+
* With identifiers:
−
* [[2HBO]]
+
** 1.0 [[akg]][c] '''+''' 1.0 [[e4hglu]][c] '''=>''' 1.0 [[4h2oglt]][c] '''+''' 1.0 [[glu__L]][c]
−
** 0 associated gene:
+
* With common name(s):
−
** 1 reconstruction source(s) associated:
+
** 1.0 2-Oxoglutarate[c] '''+''' 1.0 L erythro 4 Hydroxyglutamate C5H8NO5[c] '''=>''' 1.0 4 Hydroxy 2 oxoglutarate C5H4O6[c] '''+''' 1.0 L-Glutamate[c]
−
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
 
−
* [[ADMDC]]
+
== Genes associated with this reaction  ==
−
** 0 associated gene:
+
Genes have been associated with this reaction based on different elements listed below.
−
** 1 reconstruction source(s) associated:
+
* Gene: [[EF2372]]
−
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
* [[AGTi]]
+
== Pathways  ==
−
** 0 associated gene:
+
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
−
** 1 reconstruction source(s) associated:
+
** '''22''' reactions found over '''149''' reactions in the full pathway
−
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
== Reconstruction information  ==
−
* [[AHCYSNS]]
+
* Category: [[orthology]]
−
** 1 associated gene(s):
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
*** [[EF2694]]
+
*** Tool: [[pantograph]]
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[ASAD]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1183]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[ASPK]]
+
−
** 1 associated gene(s):
+
−
*** [[EF0368]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[ASPO1]]
+
−
** 1 associated gene(s):
+
−
*** [[EF2556]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
* [[ASPTA]]
+
−
** 1 associated gene(s):
+
−
*** [[EF2372]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[CYSS]]
+
−
** 2 associated gene(s):
+
−
*** [[EF0289]]
+
−
*** [[EF1584]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[CYSTA]]
+
−
** 1 associated gene(s):
+
−
*** [[EF2372]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[GLUCYS]]
+
−
** 1 associated gene(s):
+
−
*** [[EF3089]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[GLYTA]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
−
* [[HSDy]]
+
−
** 2 associated gene(s):
+
−
*** [[EF0368]]
+
−
*** [[EF2422]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[ILETA]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1793]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[LDH_L]]
+
−
** 1 associated gene(s):
+
−
*** [[EF0255]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[MDH]]
+
−
** 3 associated gene(s):
+
−
*** [[EF0641]]
+
−
*** [[EF0255]]
+
−
*** [[EF0388]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[METAT]]
+
−
** 1 associated gene(s):
+
−
*** [[EF0784]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[METS]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-2_reaction_to_add_delete]]
+
−
* [[METSOXR1]]
+
−
** 2 associated gene(s):
+
−
*** [[EF1681]]
+
−
*** [[EF1405]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
* [[MTAN]]
+
−
** 1 associated gene(s):
+
−
*** [[EF2694]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[RHCCE]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1182]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
* [[SERAT]]
+
−
** 1 associated gene(s):
+
−
*** [[EF0044]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[SHSL1]]
+
−
** 1 associated gene(s):
+
−
*** [[EF0290]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
* [[SLCYSS]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1584]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
* [[SPMS]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
−
== Reaction(s) not found ==
+
−
* [http://bigg.ucsd.edu/universal/reactions/2AMACHYD 2AMACHYD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/2OH3K5MPPISO 2OH3K5MPPISO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3SALATAi 3SALATAi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3SALATAim 3SALATAim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3SPYRSP 3SPYRSP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3SPYRSPh 3SPYRSPh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3SPYRSPm 3SPYRSPm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3SPYRSPm_1 3SPYRSPm_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AATC AATC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AATG AATG]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AATGm AATGm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACCAHh ACCAHh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACCAHm ACCAHm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACHMSSELCYSL ACHMSSELCYSL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACHMSSELCYSLh ACHMSSELCYSLh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACPCS ACPCS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSERL ACSERL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSERLh ACSERLh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSERLm ACSERLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSERSULL ACSERSULL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSERSULLh ACSERSULLh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSERSULLm ACSERSULLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ADSHm ADSHm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AGTim AGTim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AGTix AGTix]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AHAL AHAL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AHCi AHCi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AHHST AHHST]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AHSERL AHSERL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AHSERL2 AHSERL2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AHSL AHSL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APAPTm APAPTm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APCS APCS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ARAT ARAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ARD1 ARD1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ARD_1 ARD_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASADH ASADH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASAPT ASAPT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASP4DC ASP4DC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASPATh ASPATh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASPK_1 ASPK_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASPOm ASPOm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASPTAm ASPTAm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASPTAp ASPTAp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BCTAh BCTAh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BHMT BHMT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CTINBL CTINBL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYS CYS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSAT CYSAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSATm CYSATm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSDDS CYSDDS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSDO CYSDO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSDS CYSDS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSLYSL CYSLYSL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSO CYSO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSSADS CYSSADS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSS_1 CYSS_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSS_trdrd CYSS_trdrd]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSTAm CYSTAm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSTBL CYSTBL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSTS CYSTS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DMT DMT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DNAMTn DNAMTn]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DNAMTn2r DNAMTn2r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCL GCL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYTA_1 GLYTA_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HCYSMT HCYSMT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HCYSMT2 HCYSMT2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HSDH HSDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HSDxi HSDxi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HSERTA HSERTA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HSST HSST]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ILETAm ILETAm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LCYSTAT LCYSTAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LCYSTATm LCYSTATm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LDH_Lm LDH_Lm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LLDHh LLDHh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MATm MATm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MCLORi MCLORi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MCPST MCPST]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/METB1 METB1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/METGL METGL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/METS_1 METS_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/METSm METSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MHPGLUT MHPGLUT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MS MS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTAP MTAP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTRI MTRI]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTRK MTRK]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SAT SAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SATm SATm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SEAHCYSHYD SEAHCYSHYD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SEAHCYSHYD_1 SEAHCYSHYD_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SELCYSTGL SELCYSTGL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SELCYSTL SELCYSTL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SELCYSTLh SELCYSTLh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SELCYSTS SELCYSTS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SELMETAT SELMETAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SERHL SERHL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SHSL1h SHSL1h]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SHSL2h SHSL2h]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SHSL2r SHSL2r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SPRMS SPRMS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCHMSSELCYSL SUCHMSSELCYSL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCHMSSELCYSLh SUCHMSSELCYSLh]
+
 
== External links  ==
 
== External links  ==
−
{{#set: common_name=Cysteine and methionine metabolism}}
+
* MetaNetX (MNX) Equation : MNXR97908
−
{{#set: reaction found=25}}
+
* EC Number : 2.6.1.23
−
{{#set: total reaction=135}}
+
* BioCyc : META:4-HYDROXYGLUTAMATE-AMINOTRANSFERASE-RXN
−
{{#set: completion rate=19.0}}
+
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=L erythro 4 Hydroxyglutamate2 oxoglutarate aminotransferase}}
 +
{{#set: gene associated=EF2372}}
 +
{{#set: in pathway=map00330}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-l_plantarum_wcfs1}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:24, 21 March 2018

Reaction EHGLAT

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • L erythro 4 Hydroxyglutamate2 oxoglutarate aminotransferase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 2-Oxoglutarate[c] + 1.0 L erythro 4 Hydroxyglutamate C5H8NO5[c] => 1.0 4 Hydroxy 2 oxoglutarate C5H4O6[c] + 1.0 L-Glutamate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR97908
  • EC Number : 2.6.1.23
  • BioCyc : META:4-HYDROXYGLUTAMATE-AMINOTRANSFERASE-RXN




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