Difference between revisions of "TDPDRE"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00010 map00010] == * common_name: ** Glycolysis / Gluconeogenesis * Synonym(s): == Reaction(s) fou...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TDPDRE TDPDRE] == * direction: ** LEFT-TO-RIGHT * common name: ** DTDP-4-dehydrorhamnose 3,5-epimer...")
 
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00010 map00010] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/TDPDRE TDPDRE] ==
−
* common_name:
+
* direction:
−
** Glycolysis / Gluconeogenesis
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** DTDP-4-dehydrorhamnose 3,5-epimerase
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''24''' reactions found over '''149''' reactions in the full pathway
+
* With identifiers:
−
* [[2HBO]]
+
** 1.0 [[dtdp4d6dg]][c] '''=>''' 1.0 [[dtdp4d6dm]][c]
−
** 0 associated gene:
+
* With common name(s):
−
** 1 reconstruction source(s) associated:
+
** 1.0 DTDP-4-dehydro-6-deoxy-D-glucose[c] '''=>''' 1.0 DTDP-4-dehydro-6-deoxy-L-mannose[c]
−
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
 
−
* [[AB6PGH]]
+
== Genes associated with this reaction  ==
−
** 2 associated gene(s):
+
Genes have been associated with this reaction based on different elements listed below.
−
*** [[EF1411]]
+
* Gene: [[EF2193]]
−
*** [[EF0291]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
** 2 reconstruction source(s) associated:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
== Pathways  ==
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
* [[map00521]]: [http://www.genome.jp/dbget-bin/www_bget?map00521 map00521]
−
* [[ABUTD]]
+
** '''7''' reactions found over '''14''' reactions in the full pathway
−
** 1 associated gene(s):
+
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
−
*** [[EF0253]]
+
** '''135''' reactions found over '''694''' reactions in the full pathway
−
** 1 reconstruction source(s) associated:
+
* [[map00523]]: [http://www.genome.jp/dbget-bin/www_bget?map00523 map00523]
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[ALCD2x]]
+
== Reconstruction information  ==
−
** 2 associated gene(s):
+
* Category: [[orthology]]
−
*** [[EF0900]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[EF1826]]
+
*** Tool: [[pantograph]]
−
** 2 reconstruction source(s) associated:
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[ALDD2x]]
+
−
** 1 associated gene(s):
+
−
*** [[EF0253]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
* [[ALDD2y]]
+
−
** 1 associated gene(s):
+
−
*** [[EF0253]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
* [[ENO]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1961]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[FBA]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1167]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[FBA2]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1167]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
* [[FBP]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1503]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
* [[G6PI]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1416]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[GAPD]]
+
−
** 2 associated gene(s):
+
−
*** [[EF1526]]
+
−
*** [[EF1964]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[GAPDi_nadp]]
+
−
** 2 associated gene(s):
+
−
*** [[EF1964]]
+
−
*** [[EF1526]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
* [[GLYALDDr]]
+
−
** 1 associated gene(s):
+
−
*** [[EF0253]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
* [[HEX1]]
+
−
** 1 associated gene(s):
+
−
*** [[EF2788]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[LDH_L]]
+
−
** 1 associated gene(s):
+
−
*** [[EF0255]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[PDH]]
+
−
** 4 associated gene(s):
+
−
*** [[EF1353]]
+
−
*** [[EF1356]]
+
−
*** [[EF1355]]
+
−
*** [[EF1354]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[PFK]]
+
−
** 4 associated gene(s):
+
−
*** [[EF1045]]
+
−
*** [[EF1806]]
+
−
*** [[EF0718]]
+
−
*** [[EF0693]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[PFK_3]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1045]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
* [[PGI]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1416]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[PGK]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1963]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[PGM]]
+
−
** 2 associated gene(s):
+
−
*** [[EF2664]]
+
−
*** [[EF0195]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
* [[PYK]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1046]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[TPI]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1962]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
== Reaction(s) not found ==
+
−
* [http://bigg.ucsd.edu/universal/reactions/34DHOXPEGOX 34DHOXPEGOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/34DHPLACOX_NADP 34DHPLACOX_NADP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/34DHXMANDACOX 34DHXMANDACOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/34DHXMANDACOX_NADP 34DHXMANDACOX_NADP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3M4HDXPAC 3M4HDXPAC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3MOX4HOXPGALDOX 3MOX4HOXPGALDOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3MOX4HOXPGALDOX_NADP 3MOX4HOXPGALDOX_NADP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/4ABUTD 4ABUTD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/4HOXPACDOX_NADP 4HOXPACDOX_NADP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/4MOPDC 4MOPDC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOX 5HOXINDACTOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOXm 5HOXINDACTOXm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/6PHBG 6PHBG]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ABOR ABOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ABUTDm ABUTDm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACCOAL ACCOAL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACGAL1PPpp ACGAL1PPpp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACGAM1PPpp ACGAM1PPpp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACS ACS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSm ACSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSp ACSp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AGPOP AGPOP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AGPOPm AGPOPm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCD22xi ALCD22xi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCD22xim ALCD22xim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCD23xi ALCD23xi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCD23xim ALCD23xim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCD2ir ALCD2ir]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCD2irm ALCD2irm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCDH_nadp_hi ALCDH_nadp_hi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDD19x_P ALDD19x_P]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDD19xr ALDD19xr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDD20x ALDD20x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDD20xm ALDD20xm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDD20y ALDD20y]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDD20ym ALDD20ym]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDD22x ALDD22x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDD2xm ALDD2xm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDD2ym ALDD2ym]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDH ALDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BFBP BFBP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BFBPh BFBPh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CHOLD CHOLD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DAPOP DAPOP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ENOf ENOf]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ENOm ENOm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FBA3 FBA3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FBA3hi FBA3hi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FBAf FBAf]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FBAh FBAh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FBAm FBAm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FPGPL FPGPL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/G1PP G1PP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/G1PPpp G1PPpp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/G6PI2 G6PI2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/G6PI3 G6PI3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/G6PI_1 G6PI_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/G6PIh G6PIh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/G6PP G6PP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/G6PPer G6PPer]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GALM2 GALM2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GALM2pp GALM2pp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GAPDH_nadp_hi GAPDH_nadp_hi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GAPDHf GAPDHf]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GAPDHh GAPDHh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GAPDHm GAPDHm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCC2cm GCC2cm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCCc GCCc]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCCcm GCCcm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GK_adp GK_adp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLACO GLACO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLACOm GLACOm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLUKA GLUKA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLUKAh GLUKAh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GTPOPm GTPOPm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GULND GULND]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GULNDer GULNDer]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GalMr GalMr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/IMACTD IMACTD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/IMACTD_m IMACTD_m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LDH_Lm LDH_Lm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LLDHh LLDHh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MCLORi MCLORi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/NABTNO NABTNO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/NABTNOm NABTNOm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDCh PDCh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDCm PDCm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHa PDHa]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHam1hi PDHam1hi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHam1mi PDHam1mi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHam2hi PDHam2hi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHam2mi PDHam2mi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHbr PDHbr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHcr PDHcr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHe2hr PDHe2hr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHe2r PDHe2r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHe3hr PDHe3hr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHm PDHm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PEPCKm PEPCKm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PFK_adp PFK_adp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PFK_ppi PFK_ppi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PFKh PFKh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGCM PGCM]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGIA PGIA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGIAh PGIAh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGIBh PGIBh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGKf PGKf]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGKh PGKh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGKm PGKm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGMTh PGMTh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGMf PGMf]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGMm PGMm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPCK PPCK]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPCKm PPCKm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYK2 PYK2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYK3 PYK3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYK4 PYK4]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYK5 PYK5]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYKf PYKf]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYKm PYKm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOX PYLALDOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOXm PYLALDOXm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYRDC PYRDC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYRDC_1 PYRDC_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TPIh TPIh]
+
 
== External links  ==
 
== External links  ==
−
{{#set: common_name=Glycolysis / Gluconeogenesis}}
+
* RHEA:
−
{{#set: reaction found=24}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16969 16969]
−
{{#set: total reaction=149}}
+
* BioCyc : META:DTDPDEHYDRHAMEPIM-RXN
−
{{#set: completion rate=16.0}}
+
* MetaNetX (MNX) Equation : MNXR104759
 +
* KEGG Reaction : R06514
 +
* EC Number : 5.1.3.13
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=DTDP-4-dehydrorhamnose 3,5-epimerase}}
 +
{{#set: gene associated=EF2193}}
 +
{{#set: in pathway=map00521|map01130|map00523}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:24, 21 March 2018

Reaction TDPDRE

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • DTDP-4-dehydrorhamnose 3,5-epimerase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 DTDP-4-dehydro-6-deoxy-D-glucose[c] => 1.0 DTDP-4-dehydro-6-deoxy-L-mannose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:DTDPDEHYDRHAMEPIM-RXN
  • MetaNetX (MNX) Equation : MNXR104759
  • KEGG Reaction : R06514
  • EC Number : 5.1.3.13




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