Difference between revisions of "EAR60y"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00720 map00720] == * common_name: ** Carbon fixation pathways in prokaryotes * Synonym(s): == Reac...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/EAR60y EAR60y] == * direction: ** LEFT-TO-RIGHT * common name: ** Enoyl-[acyl-carrier-protein] redu...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00720 map00720] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/EAR60y EAR60y] ==
−
* common_name:
+
* direction:
−
** Carbon fixation pathways in prokaryotes
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C6:0)
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''14''' reactions found over '''157''' reactions in the full pathway
+
* With identifiers:
−
* [[ACACT1r]]
+
** 1.0 [[h]][c] '''+''' 1.0 [[thex2eACP]][c] '''+''' 1.0 [[nadph]][c] '''=>''' 1.0 [[nadp]][c] '''+''' 1.0 [[hexACP]][c]
−
** 1 associated gene(s):
+
* With common name(s):
−
*** [[EF1364]]
+
** 1.0 H+[c] '''+''' 1.0 Trans-Hex-2-enoyl-[acyl-carrier protein][c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''=>''' 1.0 Nicotinamide adenine dinucleotide phosphate[c] '''+''' 1.0 Hexanoyl-ACP (n-C6:0ACP)[c]
−
** 2 reconstruction source(s) associated:
+
 
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
== Genes associated with this reaction  ==
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[ACCOAC]]
+
* Gene: [[EF0282]]
−
** 5 associated gene(s):
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[EF2877]]
+
== Pathways  ==
−
*** [[EF2876]]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
*** [[EF2879]]
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
*** [[EF3240]]
+
* [[map01212]]: [http://www.genome.jp/dbget-bin/www_bget?map01212 map01212]
−
*** [[EF2875]]
+
** '''36''' reactions found over '''182''' reactions in the full pathway
−
** 3 reconstruction source(s) associated:
+
* [[map00061]]: [http://www.genome.jp/dbget-bin/www_bget?map00061 map00061]
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
** '''65''' reactions found over '''160''' reactions in the full pathway
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
== Reconstruction information  ==
−
*** [[orthology-l_plantarum_wcfs1]]
+
* Category: [[orthology]]
−
* [[ACKr]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
** 1 associated gene(s):
+
*** Tool: [[pantograph]]
−
*** [[EF1983]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[ACONTa]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
−
* [[FTHFLi]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1725]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[MDH]]
+
−
** 3 associated gene(s):
+
−
*** [[EF0641]]
+
−
*** [[EF0255]]
+
−
*** [[EF0388]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[MSAR]]
+
−
** 1 associated gene(s):
+
−
*** [[EF2956]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
* [[MTHFC]]
+
−
** 1 associated gene(s):
+
−
*** [[EF0978]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[MTHFD]]
+
−
** 1 associated gene(s):
+
−
*** [[EF0978]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[MTHFR3]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-2_reaction_to_add_delete]]
+
−
* [[PC]]
+
−
** 1 associated gene(s):
+
−
*** [[EF2456]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[PPS]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1024]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[PTA2]]
+
−
** 1 associated gene(s):
+
−
*** [[EF0949]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
* [[PTAr]]
+
−
** 1 associated gene(s):
+
−
*** [[EF0949]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
== Reaction(s) not found ==
+
−
* [http://bigg.ucsd.edu/universal/reactions/3HOPCD 3HOPCD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT2r ACACT2r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT3r ACACT3r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT4r ACACT4r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT7r ACACT7r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACCOAC_1 ACCOAC_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACCOACrm ACCOACrm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACCOAhi ACCOAhi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACITL ACITL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACKrh ACKrh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACKrm ACKrm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACONT ACONT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACONTb ACONTb]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACONTm ACONTm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACONTx ACONTx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACS ACS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSm ACSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSp ACSp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CITMCOALm CITMCOALm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1 ECOAH1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1_1 ECOAH1_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1m ECOAH1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1x ECOAH1x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9ir ECOAH9ir]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FRD FRD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FRDcm FRDcm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FRDm FRDm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FTHFLmi FTHFLmi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FUM FUM]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FUMm FUMm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GHBDHy GHBDHy]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1 HACD1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD10p HACD10p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1_1 HACD1_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1i HACD1i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1m HACD1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1x HACD1x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD2 HACD2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD2_1 HACD2_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD2i HACD2i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD2m HACD2m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD3 HACD3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD3_1 HACD3_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD3i HACD3i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD3m HACD3m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD4 HACD4]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD4i HACD4i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD4m HACD4m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD4p HACD4p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD5 HACD5]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD5i HACD5i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD5m HACD5m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD5p HACD5p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD6 HACD6]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD6i HACD6i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD6m HACD6m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD6p HACD6p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD7 HACD7]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD7i HACD7i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD7m HACD7m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD7p HACD7p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD9 HACD9]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD9m HACD9m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACDp HACDp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HADPCOADH3 HADPCOADH3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp HBCO_nadp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp_m HBCO_nadp_m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HIBDkt HIBDkt]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HMNO HMNO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ICDHhr ICDHhr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ICDHym ICDHym]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ICDHyp ICDHyp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ICDHyr ICDHyr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ITCOALm ITCOALm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MACCOAT MACCOAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh]
+
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* [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
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* [http://bigg.ucsd.edu/universal/reactions/MME MME]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MMEm MMEm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MMM2 MMM2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MMMm MMMm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTHFC_1 MTHFC_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTHFCm MTHFCm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTHFCm_1 MTHFCm_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTHFCx MTHFCx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTHFD_1 MTHFD_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTHFDm MTHFDm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTHFDm_1 MTHFDm_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTHFO MTHFO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTHFO_nadp MTHFO_nadp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTHFR2 MTHFR2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTHFR2_1 MTHFR2_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTHFR3_1 MTHFR3_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PCPPTh PCPPTh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PCPPTm PCPPTm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PCm PCm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPC PPC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPCOAC PPCOAC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPCOACm PPCOACm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPDK PPDK]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPDKh PPDKh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PTArh PTArh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PTArm PTArm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SSCOARy SSCOARy]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCD1 SUCD1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCD1m SUCD1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCD2_u6m SUCD2_u6m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCD3_u6m SUCD3_u6m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCDHh SUCDHh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCLm SUCLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCOAS SUCOAS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCOASm SUCOASm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
+
 
== External links  ==
 
== External links  ==
−
{{#set: common_name=Carbon fixation pathways in prokaryotes}}
+
* MetaNetX (MNX) Equation : MNXR97866
−
{{#set: reaction found=14}}
+
* EC Number : 2.3.1.86
−
{{#set: total reaction=157}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: completion rate=9.0}}
+
{{#set: common name=Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C6:0)}}
 +
{{#set: gene associated=EF0282}}
 +
{{#set: in pathway=map01100|map01212|map00061}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:25, 21 March 2018

Reaction EAR60y

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C6:0)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H+[c] + 1.0 Trans-Hex-2-enoyl-[acyl-carrier protein][c] + 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] => 1.0 Nicotinamide adenine dinucleotide phosphate[c] + 1.0 Hexanoyl-ACP (n-C6:0ACP)[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR97866
  • EC Number : 2.3.1.86
"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C6:0)" cannot be used as a page name in this wiki.



Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=EAR60y&oldid=10089"