Difference between revisions of "LYXI"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620] == * common_name: ** Pyruvate metabolism * Synonym(s): == Reaction(s) found == ''...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/LYXI LYXI] == * direction: ** LEFT-TO-RIGHT * common name: ** Lyxose isomerase * Synonym(s): == Re...")
 
Line 1: Line 1:
[[Category:Pathway]]
+
[[Category:Reaction]]
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/LYXI LYXI] ==
* common_name:
+
* direction:
** Pyruvate metabolism
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** Lyxose isomerase
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction(s) found ==
+
== Reaction Formula ==
'''31''' reactions found over '''163''' reactions in the full pathway
+
* With identifiers:
* [[2HBO]]
+
** 1.0 [[lyx__L]][c] '''=>''' 1.0 [[xylu__L]][c]
** 0 associated gene:
+
* With common name(s):
** 1 reconstruction source(s) associated:
+
** 1.0 L-Lyxose[c] '''=>''' 1.0 L-Xylulose[c]
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
 
* [[ABUTD]]
+
== Genes associated with this reaction  ==
** 1 associated gene(s):
+
Genes have been associated with this reaction based on different elements listed below.
*** [[EF0253]]
+
* Gene: [[EF0434]]
** 1 reconstruction source(s) associated:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
== Pathways  ==
* [[ACACT1r]]
+
* [[map00040]]: [http://www.genome.jp/dbget-bin/www_bget?map00040 map00040]
** 1 associated gene(s):
+
** '''15''' reactions found over '''54''' reactions in the full pathway
*** [[EF1364]]
+
== Reconstruction information  ==
** 2 reconstruction source(s) associated:
+
* Category: [[orthology]]
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
* [[ACALD]]
+
** 1 associated gene(s):
+
*** [[EF0900]]
+
** 2 reconstruction source(s) associated:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
*** [[orthology-l_plantarum_wcfs1]]
+
* [[ACCOAC]]
+
** 5 associated gene(s):
+
*** [[EF2877]]
+
*** [[EF2876]]
+
*** [[EF2879]]
+
*** [[EF3240]]
+
*** [[EF2875]]
+
** 3 reconstruction source(s) associated:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
*** [[orthology-l_plantarum_wcfs1]]
+
* [[ACKr]]
+
** 1 associated gene(s):
+
*** [[EF1983]]
+
** 3 reconstruction source(s) associated:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
*** [[orthology-l_plantarum_wcfs1]]
+
* [[ACYP_2]]
+
** 1 associated gene(s):
+
*** [[EF2401]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-l_plantarum_wcfs1]]
+
* [[ALDD2x]]
+
** 1 associated gene(s):
+
*** [[EF0253]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
* [[ALDD2y]]
+
** 1 associated gene(s):
+
*** [[EF0253]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
* [[GLYALDDr]]
+
** 1 associated gene(s):
+
*** [[EF0253]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
* [[GLYCLTDx]]
+
** 1 associated gene(s):
+
*** [[EF3141]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
* [[GLYCLTDy]]
+
** 1 associated gene(s):
+
*** [[EF3141]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
* [[IPPS]]
+
** 1 associated gene(s):
+
*** [[EF3317]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
* [[LALDO2x]]
+
** 1 associated gene(s):
+
*** [[EF1358]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
* [[LCADi]]
+
** 1 associated gene(s):
+
*** [[EF0253]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
* [[LDH_D]]
+
** 1 associated gene(s):
+
*** [[EF2295]]
+
** 2 reconstruction source(s) associated:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
*** [[orthology-l_plantarum_wcfs1]]
+
* [[LDH_L]]
+
** 1 associated gene(s):
+
*** [[EF0255]]
+
** 2 reconstruction source(s) associated:
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
*** [[orthology-l_plantarum_wcfs1]]
+
* [[L_LACD2]]
+
** 3 associated gene(s):
+
*** [[EF1110]]
+
*** [[EF1109]]
+
*** [[EF1108]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
* [[L_LACD3]]
+
** 3 associated gene(s):
+
*** [[EF1108]]
+
*** [[EF1109]]
+
*** [[EF1110]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
* [[MDH]]
+
** 3 associated gene(s):
+
*** [[EF0641]]
+
*** [[EF0255]]
+
*** [[EF0388]]
+
** 2 reconstruction source(s) associated:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
*** [[orthology-l_plantarum_wcfs1]]
+
* [[ME1]]
+
** 1 associated gene(s):
+
*** [[EF3316]]
+
** 2 reconstruction source(s) associated:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
*** [[orthology-l_plantarum_wcfs1]]
+
* [[ME2]]
+
** 2 associated gene(s):
+
*** [[EF1206]]
+
*** [[EF3316]]
+
** 2 reconstruction source(s) associated:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
* [[OAADC]]
+
** 1 associated gene(s):
+
*** [[EF3134]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
* [[OBTFL]]
+
** 2 associated gene(s):
+
*** [[EF1612]]
+
*** [[EF1613]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
* [[PC]]
+
** 1 associated gene(s):
+
*** [[EF2456]]
+
** 2 reconstruction source(s) associated:
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
*** [[orthology-l_plantarum_wcfs1]]
+
* [[PDH]]
+
** 4 associated gene(s):
+
*** [[EF1353]]
+
*** [[EF1356]]
+
*** [[EF1355]]
+
*** [[EF1354]]
+
** 2 reconstruction source(s) associated:
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
*** [[orthology-l_plantarum_wcfs1]]
+
* [[PFL]]
+
** 2 associated gene(s):
+
*** [[EF1612]]
+
*** [[EF1613]]
+
** 2 reconstruction source(s) associated:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
*** [[orthology-l_plantarum_wcfs1]]
+
* [[PPS]]
+
** 1 associated gene(s):
+
*** [[EF1024]]
+
** 2 reconstruction source(s) associated:
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
*** [[orthology-l_plantarum_wcfs1]]
+
* [[PTA2]]
+
** 1 associated gene(s):
+
*** [[EF0949]]
+
** 2 reconstruction source(s) associated:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
* [[PTAr]]
+
** 1 associated gene(s):
+
*** [[EF0949]]
+
** 3 reconstruction source(s) associated:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
*** [[orthology-l_plantarum_wcfs1]]
+
* [[PYK]]
+
** 1 associated gene(s):
+
*** [[EF1046]]
+
** 3 reconstruction source(s) associated:
+
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
*** [[orthology-l_plantarum_wcfs1]]
+
== Reaction(s) not found ==
+
* [http://bigg.ucsd.edu/universal/reactions/4ABUTD 4ABUTD]
+
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOX 5HOXINDACTOX]
+
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOXm 5HOXINDACTOXm]
+
* [http://bigg.ucsd.edu/universal/reactions/ABOR ABOR]
+
* [http://bigg.ucsd.edu/universal/reactions/ABUTDm ABUTDm]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT2r ACACT2r]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT3r ACACT3r]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT4r ACACT4r]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT7r ACACT7r]
+
* [http://bigg.ucsd.edu/universal/reactions/ACALDh ACALDh]
+
* [http://bigg.ucsd.edu/universal/reactions/ACCOAC_1 ACCOAC_1]
+
* [http://bigg.ucsd.edu/universal/reactions/ACCOACrm ACCOACrm]
+
* [http://bigg.ucsd.edu/universal/reactions/ACCOAL ACCOAL]
+
* [http://bigg.ucsd.edu/universal/reactions/ACCOAhi ACCOAhi]
+
* [http://bigg.ucsd.edu/universal/reactions/ACKrh ACKrh]
+
* [http://bigg.ucsd.edu/universal/reactions/ACKrm ACKrm]
+
* [http://bigg.ucsd.edu/universal/reactions/ACOAH ACOAH]
+
* [http://bigg.ucsd.edu/universal/reactions/ACOAHim ACOAHim]
+
* [http://bigg.ucsd.edu/universal/reactions/ACPh ACPh]
+
* [http://bigg.ucsd.edu/universal/reactions/ACS ACS]
+
* [http://bigg.ucsd.edu/universal/reactions/ACSm ACSm]
+
* [http://bigg.ucsd.edu/universal/reactions/ACSp ACSp]
+
* [http://bigg.ucsd.edu/universal/reactions/ACYP ACYP]
+
* [http://bigg.ucsd.edu/universal/reactions/AGPOP AGPOP]
+
* [http://bigg.ucsd.edu/universal/reactions/AGPOPm AGPOPm]
+
* [http://bigg.ucsd.edu/universal/reactions/ALDD20x ALDD20x]
+
* [http://bigg.ucsd.edu/universal/reactions/ALDD20xm ALDD20xm]
+
* [http://bigg.ucsd.edu/universal/reactions/ALDD2xm ALDD2xm]
+
* [http://bigg.ucsd.edu/universal/reactions/ALDD2ym ALDD2ym]
+
* [http://bigg.ucsd.edu/universal/reactions/ALDH ALDH]
+
* [http://bigg.ucsd.edu/universal/reactions/ALR ALR]
+
* [http://bigg.ucsd.edu/universal/reactions/APhi APhi]
+
* [http://bigg.ucsd.edu/universal/reactions/DAPOP DAPOP]
+
* [http://bigg.ucsd.edu/universal/reactions/DMALRED DMALRED]
+
* [http://bigg.ucsd.edu/universal/reactions/FUM FUM]
+
* [http://bigg.ucsd.edu/universal/reactions/FUMm FUMm]
+
* [http://bigg.ucsd.edu/universal/reactions/GCC2cm GCC2cm]
+
* [http://bigg.ucsd.edu/universal/reactions/GCCc GCCc]
+
* [http://bigg.ucsd.edu/universal/reactions/GCCcm GCCcm]
+
* [http://bigg.ucsd.edu/universal/reactions/GLACO GLACO]
+
* [http://bigg.ucsd.edu/universal/reactions/GLACOm GLACOm]
+
* [http://bigg.ucsd.edu/universal/reactions/GLYCLTDym GLYCLTDym]
+
* [http://bigg.ucsd.edu/universal/reactions/GLYOX3 GLYOX3]
+
* [http://bigg.ucsd.edu/universal/reactions/GTPOPm GTPOPm]
+
* [http://bigg.ucsd.edu/universal/reactions/IMACTD IMACTD]
+
* [http://bigg.ucsd.edu/universal/reactions/IMACTD_m IMACTD_m]
+
* [http://bigg.ucsd.edu/universal/reactions/IPPSh IPPSh]
+
* [http://bigg.ucsd.edu/universal/reactions/IPPSm IPPSm]
+
* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
+
* [http://bigg.ucsd.edu/universal/reactions/LALDO3 LALDO3]
+
* [http://bigg.ucsd.edu/universal/reactions/LCADi_D LCADi_D]
+
* [http://bigg.ucsd.edu/universal/reactions/LCADi_Dm LCADi_Dm]
+
* [http://bigg.ucsd.edu/universal/reactions/LDH_Lm LDH_Lm]
+
* [http://bigg.ucsd.edu/universal/reactions/LDHm LDHm]
+
* [http://bigg.ucsd.edu/universal/reactions/LLDHh LLDHh]
+
* [http://bigg.ucsd.edu/universal/reactions/LO LO]
+
* [http://bigg.ucsd.edu/universal/reactions/L_LACDcm L_LACDcm]
+
* [http://bigg.ucsd.edu/universal/reactions/LacR LacR]
+
* [http://bigg.ucsd.edu/universal/reactions/MACCOAT MACCOAT]
+
* [http://bigg.ucsd.edu/universal/reactions/MALS MALS]
+
* [http://bigg.ucsd.edu/universal/reactions/MALSh MALSh]
+
* [http://bigg.ucsd.edu/universal/reactions/MALSm MALSm]
+
* [http://bigg.ucsd.edu/universal/reactions/MALSp MALSp]
+
* [http://bigg.ucsd.edu/universal/reactions/MCLORi MCLORi]
+
* [http://bigg.ucsd.edu/universal/reactions/MDHC_nadp_hr MDHC_nadp_hr]
+
* [http://bigg.ucsd.edu/universal/reactions/MDH_nadp_fi MDH_nadp_fi]
+
* [http://bigg.ucsd.edu/universal/reactions/MDH_nadp_hi MDH_nadp_hi]
+
* [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf]
+
* [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh]
+
* [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
+
* [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm]
+
* [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
+
* [http://bigg.ucsd.edu/universal/reactions/MDHy MDHy]
+
* [http://bigg.ucsd.edu/universal/reactions/ME1m ME1m]
+
* [http://bigg.ucsd.edu/universal/reactions/ME2m ME2m]
+
* [http://bigg.ucsd.edu/universal/reactions/MOSDC MOSDC]
+
* [http://bigg.ucsd.edu/universal/reactions/MOX MOX]
+
* [http://bigg.ucsd.edu/universal/reactions/NABTNO NABTNO]
+
* [http://bigg.ucsd.edu/universal/reactions/NABTNOm NABTNOm]
+
* [http://bigg.ucsd.edu/universal/reactions/PCFPTh PCFPTh]
+
* [http://bigg.ucsd.edu/universal/reactions/PCFPTm PCFPTm]
+
* [http://bigg.ucsd.edu/universal/reactions/PCPPTh PCPPTh]
+
* [http://bigg.ucsd.edu/universal/reactions/PCPPTm PCPPTm]
+
* [http://bigg.ucsd.edu/universal/reactions/PCm PCm]
+
* [http://bigg.ucsd.edu/universal/reactions/PDHa PDHa]
+
* [http://bigg.ucsd.edu/universal/reactions/PDHam1hi PDHam1hi]
+
* [http://bigg.ucsd.edu/universal/reactions/PDHam1mi PDHam1mi]
+
* [http://bigg.ucsd.edu/universal/reactions/PDHam2hi PDHam2hi]
+
* [http://bigg.ucsd.edu/universal/reactions/PDHam2mi PDHam2mi]
+
* [http://bigg.ucsd.edu/universal/reactions/PDHbr PDHbr]
+
* [http://bigg.ucsd.edu/universal/reactions/PDHcr PDHcr]
+
* [http://bigg.ucsd.edu/universal/reactions/PDHe2hr PDHe2hr]
+
* [http://bigg.ucsd.edu/universal/reactions/PDHe2r PDHe2r]
+
* [http://bigg.ucsd.edu/universal/reactions/PDHe3hr PDHe3hr]
+
* [http://bigg.ucsd.edu/universal/reactions/PDHm PDHm]
+
* [http://bigg.ucsd.edu/universal/reactions/PEPCKm PEPCKm]
+
* [http://bigg.ucsd.edu/universal/reactions/PFLACTm PFLACTm]
+
* [http://bigg.ucsd.edu/universal/reactions/PFLh PFLh]
+
* [http://bigg.ucsd.edu/universal/reactions/PPC PPC]
+
* [http://bigg.ucsd.edu/universal/reactions/PPCK PPCK]
+
* [http://bigg.ucsd.edu/universal/reactions/PPCKm PPCKm]
+
* [http://bigg.ucsd.edu/universal/reactions/PPCSCT PPCSCT]
+
* [http://bigg.ucsd.edu/universal/reactions/PPDK PPDK]
+
* [http://bigg.ucsd.edu/universal/reactions/PPDKh PPDKh]
+
* [http://bigg.ucsd.edu/universal/reactions/PTArh PTArh]
+
* [http://bigg.ucsd.edu/universal/reactions/PTArm PTArm]
+
* [http://bigg.ucsd.edu/universal/reactions/PYK2 PYK2]
+
* [http://bigg.ucsd.edu/universal/reactions/PYK3 PYK3]
+
* [http://bigg.ucsd.edu/universal/reactions/PYK4 PYK4]
+
* [http://bigg.ucsd.edu/universal/reactions/PYK5 PYK5]
+
* [http://bigg.ucsd.edu/universal/reactions/PYKf PYKf]
+
* [http://bigg.ucsd.edu/universal/reactions/PYKm PYKm]
+
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOX PYLALDOX]
+
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOXm PYLALDOXm]
+
* [http://bigg.ucsd.edu/universal/reactions/SUCOAACTr SUCOAACTr]
+
 
== External links  ==
 
== External links  ==
{{#set: common_name=Pyruvate metabolism}}
+
* MetaNetX (MNX) Equation : MNXR101270
{{#set: reaction found=31}}
+
* KEGG Reaction : R01906
{{#set: total reaction=163}}
+
* EC Number : 5.3.1.-
{{#set: completion rate=19.0}}
+
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Lyxose isomerase}}
 +
{{#set: gene associated=EF0434}}
 +
{{#set: in pathway=map00040}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:25, 21 March 2018

Reaction LYXI

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Lyxose isomerase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 L-Lyxose[c] => 1.0 L-Xylulose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR101270
  • KEGG Reaction : R01906
  • EC Number : 5.3.1.-