Difference between revisions of "RMK"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DHFOR2 DHFOR2] == * direction: ** REVERSIBLE * common name: ** Dihydrofolate reductase * Synonym(s)...") |
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RMK RMK] == * direction: ** LEFT-TO-RIGHT * common name: ** Rhamnulokinase * Synonym(s): == Reacti...") |
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| Line 1: | Line 1: | ||
[[Category:Reaction]] | [[Category:Reaction]] | ||
| − | == Reaction [http://bigg.ucsd.edu/universal/reactions/ | + | == Reaction [http://bigg.ucsd.edu/universal/reactions/RMK RMK] == |
* direction: | * direction: | ||
| − | ** | + | ** LEFT-TO-RIGHT |
* common name: | * common name: | ||
| − | ** | + | ** Rhamnulokinase |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1.0 [[ | + | ** 1.0 [[atp]][c] '''+''' 1.0 [[rml]][c] '''=>''' 1.0 [[adp]][c] '''+''' 1.0 [[rml1p]][c] '''+''' 1.0 [[h]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1.0 | + | ** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 L-Rhamnulose[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 L-Rhamnulose 1-phosphate[c] '''+''' 1.0 H+[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * [[ | + | * Gene: [[EF0433]] |
| − | ** [[ | + | ** Source: [[orthology-l_plantarum_wcfs1]] |
| + | ** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]] | ||
| + | ** Source: [[orthology-b_subtilis_subsp_subtilis_str168]] | ||
== Pathways == | == Pathways == | ||
| + | * [[map00040]]: [http://www.genome.jp/dbget-bin/www_bget?map00040 map00040] | ||
| + | ** '''15''' reactions found over '''54''' reactions in the full pathway | ||
| + | * [[map00051]]: [http://www.genome.jp/dbget-bin/www_bget?map00051 map00051] | ||
| + | ** '''22''' reactions found over '''63''' reactions in the full pathway | ||
| + | * [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120] | ||
| + | ** '''104''' reactions found over '''715''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
| + | ** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]] | ||
| + | *** Tool: [[pantograph]] | ||
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]] | ** Source: [[orthology-b_subtilis_subsp_subtilis_str168]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
| − | * | + | ** Source: [[orthology-l_plantarum_wcfs1]] |
| − | ** | + | *** Tool: [[pantograph]] |
== External links == | == External links == | ||
| − | {{#set: direction= | + | * RHEA: |
| − | {{#set: common name= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20117 20117] |
| − | {{#set: gene associated= | + | * MetaNetX (MNX) Equation : MNXR104039 |
| − | {{#set: in pathway=}} | + | * KEGG Reaction : R03014 |
| − | {{#set: reconstruction category=orthology | + | * EC Number : 2.7.1.5 |
| − | {{#set: reconstruction source= | + | {{#set: direction=LEFT-TO-RIGHT}} |
| + | {{#set: common name=Rhamnulokinase}} | ||
| + | {{#set: gene associated=EF0433}} | ||
| + | {{#set: in pathway=map00040|map00051|map01120}} | ||
| + | {{#set: reconstruction category=orthology}} | ||
| + | {{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}} | ||
{{#set: reconstruction tool=pantograph}} | {{#set: reconstruction tool=pantograph}} | ||
Latest revision as of 15:29, 21 March 2018
Contents
Reaction RMK
- direction:
- LEFT-TO-RIGHT
- common name:
- Rhamnulokinase
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1.0 ATP C10H12N5O13P3[c] + 1.0 L-Rhamnulose[c] => 1.0 ADP C10H12N5O10P2[c] + 1.0 L-Rhamnulose 1-phosphate[c] + 1.0 H+[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: EF0433
Pathways
- map00040: map00040
- 15 reactions found over 54 reactions in the full pathway
- map00051: map00051
- 22 reactions found over 63 reactions in the full pathway
- map01120: map01120
- 104 reactions found over 715 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-e_coli_sstr_k12_substr_mg1655
- Tool: pantograph
- Source: orthology-b_subtilis_subsp_subtilis_str168
- Tool: pantograph
- Source: orthology-l_plantarum_wcfs1
- Tool: pantograph
- Source: orthology-e_coli_sstr_k12_substr_mg1655
External links
- RHEA:
- MetaNetX (MNX) Equation : MNXR104039
- KEGG Reaction : R03014
- EC Number : 2.7.1.5
