Difference between revisions of "FBA"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CPSS_LPL2 CPSS_LPL2] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With ide...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/FBA FBA] == * direction: ** REVERSIBLE * common name: ** Fructose-bisphosphate aldolase * Synonym(s...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/CPSS_LPL2 CPSS_LPL2] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/FBA FBA] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 +
* common name:
 +
** Fructose-bisphosphate aldolase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2.0 [[dtdprmn]][c] '''+''' 1.0 [[udpg]][c] '''+''' 4.0 [[h2o]][c] '''+''' 1.0 [[udpgal]][c] '''<=>''' 2.0 [[dtdp]][c] '''+''' 1.0 [[ump]][c] '''+''' 1.0 [[CPS_LPL2]][c] '''+''' 1.0 [[udp]][c] '''+''' 5.0 [[h]][c]
+
** 1.0 [[fdp]][c] '''<=>''' 1.0 [[g3p]][c] '''+''' 1.0 [[dhap]][c]
 
* With common name(s):
 
* With common name(s):
−
**
+
** 1.0 D-Fructose 1,6-bisphosphate[c] '''<=>''' 1.0 Glyceraldehyde 3-phosphate[c] '''+''' 1.0 Dihydroxyacetone phosphate[c]
 +
 
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[EF1167]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''45''' reactions found over '''220''' reactions in the full pathway
 +
* [[map00051]]: [http://www.genome.jp/dbget-bin/www_bget?map00051 map00051]
 +
** '''22''' reactions found over '''63''' reactions in the full pathway
 +
* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
 +
** '''16''' reactions found over '''71''' reactions in the full pathway
 +
* [[map00680]]: [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680]
 +
** '''18''' reactions found over '''75''' reactions in the full pathway
 +
* [[map00010]]: [http://www.genome.jp/dbget-bin/www_bget?map00010 map00010]
 +
** '''24''' reactions found over '''149''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 +
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
 +
** '''26''' reactions found over '''69''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[manual]]
+
* Category: [[orthology]]
−
** Source: [[manual-1_new_rxn_for_biomass]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** Comment: [[reaction added for biomass, from model l.plantarum]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14729 14729]
 +
* MetaNetX (MNX) Equation : MNXR99459
 +
* KEGG Reaction : R01068
 +
* EC Number : 4.1.2.13
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: in pathway=}}
+
{{#set: common name=Fructose-bisphosphate aldolase}}
−
{{#set: reconstruction category=manual}}
+
{{#set: gene associated=EF1167}}
−
{{#set: reconstruction source=manual-1_new_rxn_for_biomass}}
+
{{#set: in pathway=map01100|map01110|map01120|map01200|map00051|map00710|map00680|map00010|map01130|map00030}}
−
{{#set: reconstruction comment=reaction added for biomass, from model l.plantarum}}
+
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:40, 21 March 2018

Reaction FBA

  • direction:
    • REVERSIBLE
  • common name:
    • Fructose-bisphosphate aldolase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 D-Fructose 1,6-bisphosphate[c] <=> 1.0 Glyceraldehyde 3-phosphate[c] + 1.0 Dihydroxyacetone phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • MetaNetX (MNX) Equation : MNXR99459
  • KEGG Reaction : R01068
  • EC Number : 4.1.2.13




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