Difference between revisions of "ICHORS copy2"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MDDCP2ppc MDDCP2ppc] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ICHORS_copy2 ICHORS_copy2] == * direction: ** LEFT-TO-RIGHT * common name: ** Isochorismate synthas...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/MDDCP2ppc MDDCP2ppc] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/ICHORS_copy2 ICHORS_copy2] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** Isochorismate synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[h2o]][c] '''+''' 1.0 [[murein5px4px4p]][c] '''=>''' 1.0 [[murein4px4px4p]][c] '''+''' 1.0 [[ala__D]][c]
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** 1.0 [[chor]][c] '''=>''' 1.0 [[ichor]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 H2O H2O[c] '''+''' 1.0 Three disacharide linked murein units (pentapeptide crosslinked tetrapeptide (A2pm->D-ala) tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)[c] '''=>''' 1.0 Three disacharide linked murein units (tetrapeptide crosslinked tetrapeptide (A2pm->D-ala) & tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)[c] '''+''' 1.0 D-Alanine[c]
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** 1.0 Chorismate[c] '''=>''' 1.0 Isochorismate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF3129]]
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* Gene: [[EF0447]]
** 1_new_rxn_for_biomass
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** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
== Pathways  ==
 
== Pathways  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** Tool: [[pantograph]]
 
* Category: [[manual]]
 
* Category: [[manual]]
** Source: [[manual-1_new_rxn_for_biomass]]
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** Source: [[manual-curation_from_orthology]]
*** Comment: [[this was a reaction occurring in the perisplasm of e. coli]]
+
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: gene associated=EF3129}}
+
{{#set: common name=Isochorismate synthase}}
 +
{{#set: gene associated=EF0447}}
 
{{#set: in pathway=}}
 
{{#set: in pathway=}}
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=orthology|manual}}
{{#set: reconstruction source=manual-1_new_rxn_for_biomass}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|manual-curation_from_orthology}}
{{#set: reconstruction comment=this was a reaction occurring in the perisplasm of e. coli}}
+
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:41, 21 March 2018

Reaction ICHORS_copy2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Isochorismate synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Chorismate[c] => 1.0 Isochorismate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links