Difference between revisions of "GRTT"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/LYXI LYXI] == * direction: ** LEFT-TO-RIGHT * common name: ** Lyxose isomerase * Synonym(s): == Re...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DADNK DADNK] == * direction: ** LEFT-TO-RIGHT * common name: ** Deoxyadenosine kinase * Synonym(s):...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/LYXI LYXI] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/DADNK DADNK] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** Lyxose isomerase
+
** Deoxyadenosine kinase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[lyx__L]][c] '''=>''' 1.0 [[xylu__L]][c]
+
** 1.0 [[dad_2]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[adp]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[damp]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 L-Lyxose[c] '''=>''' 1.0 L-Xylulose[c]
+
** 1.0 Deoxyadenosine[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 H+[c] '''+''' 1.0 DAMP C10H12N5O6P[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF0434]]
+
* [[EF0740]]
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
* [[map00040]]: [http://www.genome.jp/dbget-bin/www_bget?map00040 map00040]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
** '''15''' reactions found over '''54''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 +
** '''97''' reactions found over '''298''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** [[l_plantarum_wcfs1]]
 +
*** [[b_subtilis_subsp_subtilis_str168]]
 
== External links  ==
 
== External links  ==
* MetaNetX (MNX) Equation : MNXR101270
+
* RHEA:
* KEGG Reaction : R01906
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23452 23452]
* EC Number : 5.3.1.-
+
* BioCyc : META:DEOXYADENOSINE-KINASE-RXN
 +
* MetaNetX (MNX) Equation : MNXR97079
 +
* KEGG Reaction : R02089
 +
* EC Number : 2.7.1.145
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=Lyxose isomerase}}
+
{{#set: common name=Deoxyadenosine kinase}}
{{#set: gene associated=EF0434}}
+
{{#set: gene associated=EF0740}}
{{#set: in pathway=map00040}}
+
{{#set: in pathway=map01100|map00230}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
+
{{#set: reconstruction source=l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}

Revision as of 15:58, 10 January 2018

Reaction DADNK

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Deoxyadenosine kinase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Deoxyadenosine[c] + 1.0 ATP C10H12N5O13P3[c] => 1.0 ADP C10H12N5O10P2[c] + 1.0 H+[c] + 1.0 DAMP C10H12N5O6P[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:DEOXYADENOSINE-KINASE-RXN
  • MetaNetX (MNX) Equation : MNXR97079
  • KEGG Reaction : R02089
  • EC Number : 2.7.1.145