Difference between revisions of "3hmp"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/3HAD80 3HAD80] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-hydroxyacyl-[acyl-carrier-prote...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CYTBD CYTBD] == * direction: ** LEFT-TO-RIGHT * common name: ** Cytochrome oxidase bd (ubiquinol-8:...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/3HAD80 3HAD80] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/CYTBD CYTBD] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C8:0)
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** Cytochrome oxidase bd (ubiquinol-8: 2 protons)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[3hoctACP]][c] '''=>''' 1.0 [[toct2eACP]][c] '''+''' 1.0 [[h2o]][c]
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** 2.0 [[h]][c] '''+''' 1.0 [[q8h2]][c] '''+''' 0.5 [[o2]][c] '''=>''' 1.0 [[h2o]][c] '''+''' 1.0 [[q8]][c] '''+''' 2.0 [[h]][e]
 
* With common name(s):
 
* With common name(s):
** 1.0 (R)-3-Hydroxyoctanoyl-[acyl-carrier protein][c] '''=>''' 1.0 Trans-Oct-2-enoyl-[acyl-carrier protein][c] '''+''' 1.0 H2O H2O[c]
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** 2.0 H+[c] '''+''' 1.0 Ubiquinol-8[c] '''+''' 0.5 O2 O2[c] '''=>''' 1.0 H2O H2O[c] '''+''' 1.0 Ubiquinone-8[c] '''+''' 2.0 H+[e]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF2878]]
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* [[EF2060]]
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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** MANUAL
* [[EF0284]]
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* [[EF2061]]
** [[pantograph]]-[[l_plantarum_wcfs1]]
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** MANUAL
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
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== Pathways  ==
 
== Pathways  ==
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''508''' reactions found over '''2349''' reactions in the full pathway
 
* [[map00780]]: [http://www.genome.jp/dbget-bin/www_bget?map00780 map00780]
 
** '''30''' reactions found over '''67''' reactions in the full pathway
 
* [[map01212]]: [http://www.genome.jp/dbget-bin/www_bget?map01212 map01212]
 
** '''36''' reactions found over '''182''' reactions in the full pathway
 
* [[map00061]]: [http://www.genome.jp/dbget-bin/www_bget?map00061 map00061]
 
** '''65''' reactions found over '''160''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
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* [[manual]]:
** [[pantograph]]:
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** [[this was a reaction occurring in the perisplasm of e. coli]]
*** [[e_coli_sstr_k12_substr_mg1655]]
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*** [[l_plantarum_wcfs1]]
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== External links  ==
 
== External links  ==
* BioCyc : META:4.2.1.59-RXN
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* MetaNetX (MNX) Equation : MNXR97031
* MetaNetX (MNX) Equation : MNXR94888
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* KEGG Reaction : R04537
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* EC Number : 2.3.1.-
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{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C8:0)}}
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{{#set: common name=Cytochrome oxidase bd (ubiquinol-8: 2 protons)}}
{{#set: gene associated=EF2878|EF0284}}
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{{#set: gene associated=EF2060|EF2061}}
{{#set: in pathway=map01100|map00780|map01212|map00061}}
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{{#set: in pathway=}}
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction category=manual}}
{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=this was a reaction occurring in the perisplasm of e. coli}}
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1}}
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Revision as of 16:03, 10 January 2018

Reaction CYTBD

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Cytochrome oxidase bd (ubiquinol-8: 2 protons)
  • Synonym(s):

Reaction Formula

  • With identifiers:
    • 2.0 h[c] + 1.0 q8h2[c] + 0.5 o2[c] => 1.0 h2o[c] + 1.0 q8[c] + 2.0 h[e]
  • With common name(s):
    • 2.0 H+[c] + 1.0 Ubiquinol-8[c] + 0.5 O2 O2[c] => 1.0 H2O H2O[c] + 1.0 Ubiquinone-8[c] + 2.0 H+[e]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR97031