Difference between revisions of "SELCYSS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PNTK PNTK] == * direction: ** LEFT-TO-RIGHT * common name: ** Pantothenate kinase * Synonym(s): ==...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RNDR3 RNDR3] == * direction: ** LEFT-TO-RIGHT * common name: ** Ribonucleoside-diphosphate reductas...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PNTK PNTK] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/RNDR3 RNDR3] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Pantothenate kinase
+
** Ribonucleoside-diphosphate reductase (CDP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[pnto__R]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[adp]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[4ppan]][c]
+
** 1.0 [[cdp]][c] '''+''' 1.0 [[trdrd]][c] '''=>''' 1.0 [[dcdp]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[trdox]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 (R)-Pantothenate[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 H+[c] '''+''' 1.0 D-4'-Phosphopantothenate[c]
+
** 1.0 CDP C9H12N3O11P2[c] '''+''' 1.0 Reduced thioredoxin[c] '''=>''' 1.0 DCDP C9H12N3O10P2[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 Oxidized thioredoxin[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0168]]
+
* [[EF0471]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 +
* [[EF0472]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 +
* [[EF0470]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00770]]: [http://www.genome.jp/dbget-bin/www_bget?map00770 map00770]
+
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
−
** '''21''' reactions found over '''75''' reactions in the full pathway
+
** '''82''' reactions found over '''244''' reactions in the full pathway
 +
* [[map00480]]: [http://www.genome.jp/dbget-bin/www_bget?map00480 map00480]
 +
** '''10''' reactions found over '''39''' reactions in the full pathway
 +
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 +
** '''97''' reactions found over '''298''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
−
*** [[e_coli_sstr_k12_substr_mg1655]]
 
 
*** [[l_plantarum_wcfs1]]
 
*** [[l_plantarum_wcfs1]]
 
*** [[b_subtilis_subsp_subtilis_str168]]
 
*** [[b_subtilis_subsp_subtilis_str168]]
 
== External links  ==
 
== External links  ==
−
* EC Number : 2.7.1.33
+
* BioCyc : META:CDPREDUCT-RXN
−
* BioCyc : META:PANTOTHENATE-KIN-RXN
+
* MetaNetX (MNX) Equation : MNXR104064
−
* MetaNetX (MNX) Equation : MNXR103050
+
* KEGG Reaction : R02024
−
* RHEA:
+
* EC Number : 1.17.4.1
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16373 16373]
+
−
* Reactome : REACT_R-BTA-196857
+
−
* KEGG Reaction : R03018
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Pantothenate kinase}}
+
{{#set: common name=Ribonucleoside-diphosphate reductase (CDP)}}
−
{{#set: gene associated=EF0168}}
+
{{#set: gene associated=EF0471|EF0472|EF0470}}
−
{{#set: in pathway=map01100|map00770}}
+
{{#set: in pathway=map01100|map00240|map00480|map00230}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
+
{{#set: reconstruction source=l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}

Revision as of 16:17, 10 January 2018

Reaction RNDR3

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Ribonucleoside-diphosphate reductase (CDP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 CDP C9H12N3O11P2[c] + 1.0 Reduced thioredoxin[c] => 1.0 DCDP C9H12N3O10P2[c] + 1.0 H2O H2O[c] + 1.0 Oxidized thioredoxin[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • BioCyc : META:CDPREDUCT-RXN
  • MetaNetX (MNX) Equation : MNXR104064
  • KEGG Reaction : R02024
  • EC Number : 1.17.4.1




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