Difference between revisions of "ADADir"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLCURt2r GLCURt2r] == * direction: ** REVERSIBLE * common name: ** D-glucuronate transport via prot...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MDH MDH] == * direction: ** REVERSIBLE * common name: ** Malate dehydrogenase * Synonym(s): == Rea...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLCURt2r GLCURt2r] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/MDH MDH] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 
* common name:
 
* common name:
−
** D-glucuronate transport via proton symport, reversible
+
** Malate dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h]][e] '''+''' 1.0 [[glcur]][e] '''<=>''' 1.0 [[glcur]][c] '''+''' 1.0 [[h]][c]
+
** 1.0 [[mal__L]][c] '''+''' 1.0 [[nad]][c] '''<=>''' 1.0 [[oaa]][c] '''+''' 1.0 [[nadh]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H+[e] '''+''' 1.0 D-Glucuronate[e] '''<=>''' 1.0 D-Glucuronate[c] '''+''' 1.0 H+[c]
+
** 1.0 L-Malate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''<=>''' 1.0 Oxaloacetate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF2992]]
+
* [[EF0641]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
−
* [[EF0385]]
+
* [[EF0255]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
* [[EF0388]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630]
 +
** '''21''' reactions found over '''129''' reactions in the full pathway
 +
* [[map00720]]: [http://www.genome.jp/dbget-bin/www_bget?map00720 map00720]
 +
** '''14''' reactions found over '''157''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 +
* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
 +
** '''25''' reactions found over '''135''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''45''' reactions found over '''220''' reactions in the full pathway
 +
* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
 +
** '''31''' reactions found over '''163''' reactions in the full pathway
 +
* [[map00680]]: [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680]
 +
** '''18''' reactions found over '''75''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
 +
** '''16''' reactions found over '''71''' reactions in the full pathway
 +
* [[map00020]]: [http://www.genome.jp/dbget-bin/www_bget?map00020 map00020]
 +
** '''4''' reactions found over '''70''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** [[e_coli_sstr_k12_substr_mg1655]]
 +
*** [[l_plantarum_wcfs1]]
 
== External links  ==
 
== External links  ==
 +
* EC Number : 1.1.1.299
 +
* BioCyc : META:MALATE-DEH-RXN
 +
* MetaNetX (MNX) Equation : MNXR101439
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28955 28955]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21432 21432]
−
* MetaNetX (MNX) Equation : MNXR100234
+
* Reactome : REACT_R-ATH-70979
 +
* KEGG Reaction : R00342
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=D-glucuronate transport via proton symport, reversible}}
+
{{#set: common name=Malate dehydrogenase}}
−
{{#set: gene associated=EF2992|EF0385}}
+
{{#set: gene associated=EF0641|EF0255|EF0388}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=map01100|map00630|map00720|map01120|map00270|map01200|map00620|map00680|map01110|map00710|map00020|map01130}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=b_subtilis_subsp_subtilis_str168}}
+
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1}}

Revision as of 15:38, 10 January 2018

Reaction MDH

  • direction:
    • REVERSIBLE
  • common name:
    • Malate dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 L-Malate[c] + 1.0 Nicotinamide adenine dinucleotide[c] <=> 1.0 Oxaloacetate[c] + 1.0 Nicotinamide adenine dinucleotide - reduced[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 1.1.1.299
  • BioCyc : META:MALATE-DEH-RXN
  • MetaNetX (MNX) Equation : MNXR101439
  • RHEA:
  • Reactome : REACT_R-ATH-70979
  • KEGG Reaction : R00342




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