Difference between revisions of "F6p"

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(Created page with "Category:Metabolite == Metabolite [http://bigg.ucsd.edu/universal/metabolites/orot orot] == * common name: ** Orotate C5H3N2O4 * Synonym(s): == Reaction(s) known to consu...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710] == * common_name: ** Carbon fixation in photosynthetic organisms * Synonym(s): ==...")
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[[Category:Metabolite]]
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[[Category:Pathway]]
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== Metabolite [http://bigg.ucsd.edu/universal/metabolites/orot orot] ==
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710] ==
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* common name:
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* common_name:
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** Orotate C5H3N2O4
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** Carbon fixation in photosynthetic organisms
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction(s) found ==
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* [[OROTt2_2pppe]]
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'''16''' reactions found over '''71''' reactions in the full pathway
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* [[TransportSeed_orot]]
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* [[ALATA_L]]
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== Reaction(s) known to produce the compound ==
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** 3 associated gene(s):
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* [[OROTt2_2pppe]]
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*** [[EF2372]]
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* [[TransportSeed_orot]]
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*** [[EF1314]]
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== Reaction(s) of unknown directionality ==
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*** [[EF1706]]
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* [[DHORDi]]
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** 1 reconstruction source(s) associated:
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* [[ExchangeSeed_orot]]
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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* [[DHORD_NAD]]
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* [[ASPTA]]
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* [[ORPT]]
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** 1 associated gene(s):
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*** [[EF2372]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[FBA]]
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** 1 associated gene(s):
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*** [[EF1167]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[FBA2]]
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** 1 associated gene(s):
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*** [[EF1167]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[FBP]]
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** 1 associated gene(s):
 +
*** [[EF1503]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[GAPD]]
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** 2 associated gene(s):
 +
*** [[EF1526]]
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*** [[EF1964]]
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** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[GAPDi_nadp]]
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** 2 associated gene(s):
 +
*** [[EF1964]]
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*** [[EF1526]]
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** 1 reconstruction source(s) associated:
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[MDH]]
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** 3 associated gene(s):
 +
*** [[EF0641]]
 +
*** [[EF0255]]
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*** [[EF0388]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[ME1]]
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** 1 associated gene(s):
 +
*** [[EF3316]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-l_plantarum_wcfs1]]
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* [[ME2]]
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** 2 associated gene(s):
 +
*** [[EF1206]]
 +
*** [[EF3316]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* [[PGK]]
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** 1 associated gene(s):
 +
*** [[EF1963]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[RPE]]
 +
** 1 associated gene(s):
 +
*** [[EF3118]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[RPI]]
 +
** 3 associated gene(s):
 +
*** [[EF0197]]
 +
*** [[EF1835]]
 +
*** [[EF1834]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
* [[TKT1]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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* [[TKT2]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
 +
* [[TPI]]
 +
** 1 associated gene(s):
 +
*** [[EF1962]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** [[orthology-l_plantarum_wcfs1]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/3SALATAi 3SALATAi]
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* [http://bigg.ucsd.edu/universal/reactions/3SALATAim 3SALATAim]
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* [http://bigg.ucsd.edu/universal/reactions/AATC AATC]
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* [http://bigg.ucsd.edu/universal/reactions/AATG AATG]
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* [http://bigg.ucsd.edu/universal/reactions/AATGm AATGm]
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* [http://bigg.ucsd.edu/universal/reactions/ALATA_Lm ALATA_Lm]
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* [http://bigg.ucsd.edu/universal/reactions/ASPATh ASPATh]
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* [http://bigg.ucsd.edu/universal/reactions/ASPTAm ASPTAm]
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* [http://bigg.ucsd.edu/universal/reactions/ASPTAp ASPTAp]
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* [http://bigg.ucsd.edu/universal/reactions/BFBP BFBP]
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* [http://bigg.ucsd.edu/universal/reactions/BFBPh BFBPh]
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* [http://bigg.ucsd.edu/universal/reactions/FBA3 FBA3]
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* [http://bigg.ucsd.edu/universal/reactions/FBA3hi FBA3hi]
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* [http://bigg.ucsd.edu/universal/reactions/FBAf FBAf]
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* [http://bigg.ucsd.edu/universal/reactions/FBAh FBAh]
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* [http://bigg.ucsd.edu/universal/reactions/FBAm FBAm]
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* [http://bigg.ucsd.edu/universal/reactions/FPGPL FPGPL]
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* [http://bigg.ucsd.edu/universal/reactions/GAPDH_nadp_hi GAPDH_nadp_hi]
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* [http://bigg.ucsd.edu/universal/reactions/GAPDHf GAPDHf]
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* [http://bigg.ucsd.edu/universal/reactions/GAPDHh GAPDHh]
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* [http://bigg.ucsd.edu/universal/reactions/GAPDHm GAPDHm]
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* [http://bigg.ucsd.edu/universal/reactions/LCYSTAT LCYSTAT]
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* [http://bigg.ucsd.edu/universal/reactions/LCYSTATm LCYSTATm]
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* [http://bigg.ucsd.edu/universal/reactions/MDHC_nadp_hr MDHC_nadp_hr]
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* [http://bigg.ucsd.edu/universal/reactions/MDH_nadp_fi MDH_nadp_fi]
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* [http://bigg.ucsd.edu/universal/reactions/MDH_nadp_hi MDH_nadp_hi]
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* [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf]
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* [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh]
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* [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
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* [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm]
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* [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
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* [http://bigg.ucsd.edu/universal/reactions/MDHy MDHy]
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* [http://bigg.ucsd.edu/universal/reactions/ME1m ME1m]
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* [http://bigg.ucsd.edu/universal/reactions/ME2m ME2m]
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* [http://bigg.ucsd.edu/universal/reactions/PGKf PGKf]
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* [http://bigg.ucsd.edu/universal/reactions/PGKh PGKh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGKm PGKm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPC PPC]
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* [http://bigg.ucsd.edu/universal/reactions/PPCK PPCK]
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* [http://bigg.ucsd.edu/universal/reactions/PPCKm PPCKm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPDK PPDK]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPDKh PPDKh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PRUK PRUK]
 +
* [http://bigg.ucsd.edu/universal/reactions/PRUK_1 PRUK_1]
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* [http://bigg.ucsd.edu/universal/reactions/RBCh RBCh]
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* [http://bigg.ucsd.edu/universal/reactions/RBCh_1 RBCh_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/RBPC RBPC]
 +
* [http://bigg.ucsd.edu/universal/reactions/RBPCh RBPCh]
 +
* [http://bigg.ucsd.edu/universal/reactions/RPEh RPEh]
 +
* [http://bigg.ucsd.edu/universal/reactions/RPIh RPIh]
 +
* [http://bigg.ucsd.edu/universal/reactions/SBP SBP]
 +
* [http://bigg.ucsd.edu/universal/reactions/SBP_1 SBP_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/TKT1h TKT1h]
 +
* [http://bigg.ucsd.edu/universal/reactions/TKT2h TKT2h]
 +
* [http://bigg.ucsd.edu/universal/reactions/TPIh TPIh]
 
== External links  ==
 
== External links  ==
−
{{#set: common name=Orotate C5H3N2O4}}
+
{{#set: common_name=Carbon fixation in photosynthetic organisms}}
−
{{#set: consumed by=OROTt2_2pppe|TransportSeed_orot}}
+
{{#set: reaction found=16}}
−
{{#set: produced by=OROTt2_2pppe|TransportSeed_orot}}
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{{#set: total reaction=71}}
−
{{#set: consumed or produced by=DHORDi|ExchangeSeed_orot|DHORD_NAD|ORPT}}
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{{#set: completion rate=23.0}}

Revision as of 18:28, 18 March 2018

Pathway map00710

  • common_name:
    • Carbon fixation in photosynthetic organisms
  • Synonym(s):

Reaction(s) found

16 reactions found over 71 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=F6p&oldid=7349"