Difference between revisions of "ACP"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PFK_3 PFK_3] == * direction: ** LEFT-TO-RIGHT * common name: ** Phosphofructokinase (s7p) * Synonym...") |
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MDH MDH] == * direction: ** REVERSIBLE * common name: ** Malate dehydrogenase * Synonym(s): == Rea...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://bigg.ucsd.edu/universal/reactions/ | + | == Reaction [http://bigg.ucsd.edu/universal/reactions/MDH MDH] == |
* direction: | * direction: | ||
− | ** | + | ** REVERSIBLE |
* common name: | * common name: | ||
− | ** | + | ** Malate dehydrogenase |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1.0 [[ | + | ** 1.0 [[nad]][c] '''+''' 1.0 [[mal__L]][c] '''<=>''' 1.0 [[nadh]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[oaa]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1.0 | + | ** 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 L-Malate[c] '''<=>''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 H+[c] '''+''' 1.0 Oxaloacetate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * [[ | + | * [[EF0641]] |
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]] | ** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]] | ||
+ | * [[EF0255]] | ||
+ | ** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]] | ||
+ | * [[EF0388]] | ||
+ | ** [[pantograph]]-[[l_plantarum_wcfs1]] | ||
== Pathways == | == Pathways == | ||
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100] | * [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100] | ||
** '''460''' reactions found over '''2349''' reactions in the full pathway | ** '''460''' reactions found over '''2349''' reactions in the full pathway | ||
− | * [[ | + | * [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630] |
− | ** ''' | + | ** '''21''' reactions found over '''129''' reactions in the full pathway |
+ | * [[map00720]]: [http://www.genome.jp/dbget-bin/www_bget?map00720 map00720] | ||
+ | ** '''14''' reactions found over '''157''' reactions in the full pathway | ||
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120] | * [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120] | ||
** '''104''' reactions found over '''715''' reactions in the full pathway | ** '''104''' reactions found over '''715''' reactions in the full pathway | ||
− | * [[ | + | * [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270] |
− | ** ''' | + | ** '''25''' reactions found over '''135''' reactions in the full pathway |
− | * [[ | + | * [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200] |
− | ** ''' | + | ** '''45''' reactions found over '''220''' reactions in the full pathway |
+ | * [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710] | ||
+ | ** '''16''' reactions found over '''71''' reactions in the full pathway | ||
* [[map00680]]: [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680] | * [[map00680]]: [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680] | ||
** '''18''' reactions found over '''75''' reactions in the full pathway | ** '''18''' reactions found over '''75''' reactions in the full pathway | ||
− | * [[ | + | * [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110] |
− | ** ''' | + | ** '''179''' reactions found over '''1054''' reactions in the full pathway |
+ | * [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620] | ||
+ | ** '''31''' reactions found over '''163''' reactions in the full pathway | ||
+ | * [[map00020]]: [http://www.genome.jp/dbget-bin/www_bget?map00020 map00020] | ||
+ | ** '''4''' reactions found over '''70''' reactions in the full pathway | ||
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130] | * [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130] | ||
** '''135''' reactions found over '''694''' reactions in the full pathway | ** '''135''' reactions found over '''694''' reactions in the full pathway | ||
− | |||
− | |||
== Reconstruction information == | == Reconstruction information == | ||
− | * [[orthology]]: | + | * Category: [[orthology]] |
− | ** [[pantograph]]: | + | ** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]] |
− | *** [[ | + | *** Tool: [[pantograph]] |
+ | ** Source: [[orthology-l_plantarum_wcfs1]] | ||
+ | *** Tool: [[pantograph]] | ||
== External links == | == External links == | ||
+ | * EC Number : 1.1.1.299 | ||
+ | * BioCyc : META:MALATE-DEH-RXN | ||
+ | * MetaNetX (MNX) Equation : MNXR101439 | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21432 21432] |
− | * | + | * Reactome : REACT_R-ATH-70979 |
− | + | * KEGG Reaction : R00342 | |
− | * KEGG Reaction : | + | {{#set: direction=REVERSIBLE}} |
− | + | {{#set: common name=Malate dehydrogenase}} | |
− | {{#set: direction= | + | {{#set: gene associated=EF0641|EF0255|EF0388}} |
− | {{#set: common name= | + | {{#set: in pathway=map01100|map00630|map00720|map01120|map00270|map01200|map00710|map00680|map01110|map00620|map00020|map01130}} |
− | {{#set: gene associated= | + | |
− | {{#set: in pathway=map01100| | + | |
{{#set: reconstruction category=orthology}} | {{#set: reconstruction category=orthology}} | ||
+ | {{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}} | ||
{{#set: reconstruction tool=pantograph}} | {{#set: reconstruction tool=pantograph}} | ||
− |
Revision as of 18:32, 18 March 2018
Contents
Reaction MDH
- direction:
- REVERSIBLE
- common name:
- Malate dehydrogenase
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1.0 Nicotinamide adenine dinucleotide[c] + 1.0 L-Malate[c] <=> 1.0 Nicotinamide adenine dinucleotide - reduced[c] + 1.0 H+[c] + 1.0 Oxaloacetate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
Pathways
- map01100: map01100
- 460 reactions found over 2349 reactions in the full pathway
- map00630: map00630
- 21 reactions found over 129 reactions in the full pathway
- map00720: map00720
- 14 reactions found over 157 reactions in the full pathway
- map01120: map01120
- 104 reactions found over 715 reactions in the full pathway
- map00270: map00270
- 25 reactions found over 135 reactions in the full pathway
- map01200: map01200
- 45 reactions found over 220 reactions in the full pathway
- map00710: map00710
- 16 reactions found over 71 reactions in the full pathway
- map00680: map00680
- 18 reactions found over 75 reactions in the full pathway
- map01110: map01110
- 179 reactions found over 1054 reactions in the full pathway
- map00620: map00620
- 31 reactions found over 163 reactions in the full pathway
- map00020: map00020
- 4 reactions found over 70 reactions in the full pathway
- map01130: map01130
- 135 reactions found over 694 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-e_coli_sstr_k12_substr_mg1655
- Tool: pantograph
- Source: orthology-l_plantarum_wcfs1
- Tool: pantograph
- Source: orthology-e_coli_sstr_k12_substr_mg1655
External links
- EC Number : 1.1.1.299
- BioCyc : META:MALATE-DEH-RXN
- MetaNetX (MNX) Equation : MNXR101439
- RHEA:
- Reactome : REACT_R-ATH-70979
- KEGG Reaction : R00342