Difference between revisions of "Ala B"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/3HAD80 3HAD80] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-hydroxyacyl-[acyl-carrier-prote...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CYTDH CYTDH] == * direction: ** LEFT-TO-RIGHT * common name: ** Cytidine hydrolase * Synonym(s): =...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/3HAD80 3HAD80] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/CYTDH CYTDH] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C8:0)
+
** Cytidine hydrolase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[3hoctACP]][c] '''=>''' 1.0 [[toct2eACP]][c] '''+''' 1.0 [[h2o]][c]
+
** 1.0 [[cytd]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[csn]][c] '''+''' 1.0 [[rib__D]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 (R)-3-Hydroxyoctanoyl-[acyl-carrier protein][c] '''=>''' 1.0 Trans-Oct-2-enoyl-[acyl-carrier protein][c] '''+''' 1.0 H2O H2O[c]
+
** 1.0 Cytidine[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Cytosine[c] '''+''' 1.0 D-Ribose[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF2878]]
+
* [[EF1921]]
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
* [[EF0284]]
+
** [[pantograph]]-[[l_plantarum_wcfs1]]
+
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 +
** '''82''' reactions found over '''244''' reactions in the full pathway
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
* [[map00780]]: [http://www.genome.jp/dbget-bin/www_bget?map00780 map00780]
+
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
** '''26''' reactions found over '''67''' reactions in the full pathway
+
** '''97''' reactions found over '''298''' reactions in the full pathway
* [[map01212]]: [http://www.genome.jp/dbget-bin/www_bget?map01212 map01212]
+
** '''36''' reactions found over '''182''' reactions in the full pathway
+
* [[map00061]]: [http://www.genome.jp/dbget-bin/www_bget?map00061 map00061]
+
** '''65''' reactions found over '''160''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
+
* Category: [[orthology]]
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
*** [[l_plantarum_wcfs1]]
+
 
== External links  ==
 
== External links  ==
* BioCyc : META:4.2.1.59-RXN
+
* RHEA:
* MetaNetX (MNX) Equation : MNXR94888
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27958 27958]
* KEGG Reaction : R04537
+
* BioCyc : META:RXN0-361
* EC Number : 2.3.1.-
+
* MetaNetX (MNX) Equation : MNXR97040
 +
* KEGG Reaction : R02137
 +
* EC Number : 3.2.2.3
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C8:0)}}
+
{{#set: common name=Cytidine hydrolase}}
{{#set: gene associated=EF2878|EF0284}}
+
{{#set: gene associated=EF1921}}
{{#set: in pathway=map01100|map00780|map01212|map00061}}
+
{{#set: in pathway=map00240|map01100|map00230}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1}}
 

Revision as of 18:33, 18 March 2018

Reaction CYTDH

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Cytidine hydrolase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Cytidine[c] + 1.0 H2O H2O[c] => 1.0 Cytosine[c] + 1.0 D-Ribose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:RXN0-361
  • MetaNetX (MNX) Equation : MNXR97040
  • KEGG Reaction : R02137
  • EC Number : 3.2.2.3