Difference between revisions of "EF0871"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/HEX7 HEX7] == * direction: ** LEFT-TO-RIGHT * common name: ** Hexokinase (D-fructose:ATP) * Synonym...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CSPMDDC CSPMDDC] == * direction: ** LEFT-TO-RIGHT * common name: ** Carboxynorspermidine decarboxyl...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/HEX7 HEX7] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/CSPMDDC CSPMDDC] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Hexokinase (D-fructose:ATP)
+
** Carboxynorspermidine decarboxylase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[atp]][c] '''+''' 1.0 [[fru]][c] '''=>''' 1.0 [[f6p]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[adp]][c]
+
** 1.0 [[cspmd]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[spmd]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 D-Fructose[c] '''=>''' 1.0 D-Fructose 6-phosphate[c] '''+''' 1.0 H+[c] '''+''' 1.0 ADP C10H12N5O10P2[c]
+
** 1.0 Carboxyspermidine[c] '''+''' 1.0 H+[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 Spermidine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF0840]]
 
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
−
* [[EF2265]]
 
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
−
* [[EF0424]]
 
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
−
* [[EF1179]]
 
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00520]]: [http://www.genome.jp/dbget-bin/www_bget?map00520 map00520]
+
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
−
** '''24''' reactions found over '''80''' reactions in the full pathway
+
** '''22''' reactions found over '''149''' reactions in the full pathway
−
* [[map00500]]: [http://www.genome.jp/dbget-bin/www_bget?map00500 map00500]
+
−
** '''15''' reactions found over '''81''' reactions in the full pathway
+
−
* [[map00051]]: [http://www.genome.jp/dbget-bin/www_bget?map00051 map00051]
+
−
** '''22''' reactions found over '''63''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[l_plantarum_wcfs1]]
+
*** Tool: [[meneco]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR100614
+
* RHEA:
−
* KEGG Reaction : R00867
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34095 34095]
−
* EC Number : 2.7.1.1
+
* EC Number : 4.1.1
 +
* MetaNetX (MNX) Equation : MNXR96935
 +
* KEGG Reaction : R09081
 +
* BioCyc : META:RXN-11564
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Hexokinase (D-fructose:ATP)}}
+
{{#set: common name=Carboxynorspermidine decarboxylase}}
−
{{#set: gene associated=EF0840|EF2265|EF0424|EF1179}}
+
{{#set: in pathway=map01100|map00330}}
−
{{#set: in pathway=map01100|map00520|map00500|map00051}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction source=l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
+
{{#set: reconstruction comment=added for gapfilling}}

Revision as of 18:34, 18 March 2018

Reaction CSPMDDC

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Carboxynorspermidine decarboxylase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Carboxyspermidine[c] + 1.0 H+[c] => 1.0 CO2 CO2[c] + 1.0 Spermidine[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 4.1.1
  • MetaNetX (MNX) Equation : MNXR96935
  • KEGG Reaction : R09081
  • BioCyc : META:RXN-11564




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