Difference between revisions of "3hmp"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CYTBD CYTBD] == * direction: ** LEFT-TO-RIGHT * common name: ** Cytochrome oxidase bd (ubiquinol-8:...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/UAMAS UAMAS] == * direction: ** LEFT-TO-RIGHT * common name: ** UDP-N-acetylmuramoyl-L-alanine synt...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/CYTBD CYTBD] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/UAMAS UAMAS] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Cytochrome oxidase bd (ubiquinol-8: 2 protons)
+
** UDP-N-acetylmuramoyl-L-alanine synthetase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2.0 [[h]][c] '''+''' 1.0 [[q8h2]][c] '''+''' 0.5 [[o2]][c] '''=>''' 1.0 [[h2o]][c] '''+''' 1.0 [[q8]][c] '''+''' 2.0 [[h]][e]
+
** 1.0 [[uamr]][c] '''+''' 1.0 [[ala__L]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[uama]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2.0 H+[c] '''+''' 1.0 Ubiquinol-8[c] '''+''' 0.5 O2 O2[c] '''=>''' 1.0 H2O H2O[c] '''+''' 1.0 Ubiquinone-8[c] '''+''' 2.0 H+[e]
+
** 1.0 UDP-N-acetylmuramate[c] '''+''' 1.0 L-Alanine[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 UDP-N-acetylmuramoyl-L-alanine[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 H+[c] '''+''' 1.0 Phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF2060]]
+
* [[EF1908]]
−
** MANUAL
+
** [[pantograph]]-[[l_plantarum_wcfs1]]
−
* [[EF2061]]
+
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
−
** MANUAL
+
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00471]]: [http://www.genome.jp/dbget-bin/www_bget?map00471 map00471]
 +
** '''4''' reactions found over '''10''' reactions in the full pathway
 +
* [[map00550]]: [http://www.genome.jp/dbget-bin/www_bget?map00550 map00550]
 +
** '''10''' reactions found over '''27''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[orthology]]
−
** [[this was a reaction occurring in the perisplasm of e. coli]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR97031
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23372 23372]
 +
* BioCyc : META:UDP-NACMUR-ALA-LIG-RXN
 +
* MetaNetX (MNX) Equation : MNXR105039
 +
* KEGG Reaction : R03193
 +
* EC Number : 6.3.2.8
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Cytochrome oxidase bd (ubiquinol-8: 2 protons)}}
+
{{#set: common name=UDP-N-acetylmuramoyl-L-alanine synthetase}}
−
{{#set: gene associated=EF2060|EF2061}}
+
{{#set: gene associated=EF1908}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=map01100|map00471|map00550}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=this was a reaction occurring in the perisplasm of e. coli}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 18:34, 18 March 2018

Reaction UAMAS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • UDP-N-acetylmuramoyl-L-alanine synthetase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 UDP-N-acetylmuramate[c] + 1.0 L-Alanine[c] + 1.0 ATP C10H12N5O13P3[c] => 1.0 UDP-N-acetylmuramoyl-L-alanine[c] + 1.0 ADP C10H12N5O10P2[c] + 1.0 H+[c] + 1.0 Phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:UDP-NACMUR-ALA-LIG-RXN
  • MetaNetX (MNX) Equation : MNXR105039
  • KEGG Reaction : R03193
  • EC Number : 6.3.2.8




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