Difference between revisions of "Crn"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DHQTi DHQTi] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-dehydroquinate dehydratase, irrev...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PAPPT5 PAPPT5] == * direction: ** LEFT-TO-RIGHT * common name: ** phospho N acetylmuramoyl pentapep...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/DHQTi DHQTi] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PAPPT5 PAPPT5] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 3-dehydroquinate dehydratase, irreversible
+
** phospho N acetylmuramoyl pentapeptide transferase meso 2 6 diaminopimelate
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[3dhq]][c] '''=>''' 1.0 [[h2o]][c] '''+''' 1.0 [[3dhsk]][c]
+
** 1.0 [[ugmdalac]][c] '''+''' 1.0 [[udcpp]][c] '''=>''' 1.0 [[ump]][c] '''+''' 1.0 [[uagmdalac]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 3-Dehydroquinate[c] '''=>''' 1.0 H2O H2O[c] '''+''' 1.0 3-Dehydroshikimate[c]
+
** 1.0 UDP_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_lactate[c] '''+''' 1.0 Undecaprenyl phosphate[c] '''=>''' 1.0 UMP C9H11N2O9P[c] '''+''' 1.0 Undecaprenyl_diphospho_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_lactate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1731]]
+
* [[EF0992]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
−
** '''135''' reactions found over '''694''' reactions in the full pathway
 
−
* [[map00400]]: [http://www.genome.jp/dbget-bin/www_bget?map00400 map00400]
 
−
** '''13''' reactions found over '''59''' reactions in the full pathway
 
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
 
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 
−
** '''56''' reactions found over '''228''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
*** [[l_plantarum_wcfs1]]
+
* Category: [[manual]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
** Source: [[manual-curation_from_orthology]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21096 21096]
 
−
* BioCyc : META:3-DEHYDROQUINATE-DEHYDRATASE-RXN
 
−
* MetaNetX (MNX) Equation : MNXR97449
 
−
* KEGG Reaction : R03084
 
−
* EC Number : 4.2.1.10
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-dehydroquinate dehydratase, irreversible}}
+
{{#set: common name=phospho N acetylmuramoyl pentapeptide transferase meso 2 6 diaminopimelate }}
−
{{#set: gene associated=EF1731}}
+
{{#set: gene associated=EF0992}}
−
{{#set: in pathway=map01100|map01130|map00400|map01110|map01230}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|manual}}
 +
{{#set: reconstruction source=manual-curation_from_orthology|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 

Revision as of 18:36, 18 March 2018

Reaction PAPPT5

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • phospho N acetylmuramoyl pentapeptide transferase meso 2 6 diaminopimelate
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 UDP_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_lactate[c] + 1.0 Undecaprenyl phosphate[c] => 1.0 UMP C9H11N2O9P[c] + 1.0 Undecaprenyl_diphospho_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_lactate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

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