Difference between revisions of "Trnasecys"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GCALDD GCALDD] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycolaldehyde dehydrogenase * Sy...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/UAPGR UAPGR] == * direction: ** LEFT-TO-RIGHT * common name: ** UDP-N-acetylenolpyruvoylglucosamine...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/GCALDD GCALDD] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/UAPGR UAPGR] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Glycolaldehyde dehydrogenase
+
** UDP-N-acetylenolpyruvoylglucosamine reductase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[nad]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[gcald]][c] '''=>''' 2.0 [[h]][c] '''+''' 1.0 [[glyclt]][c] '''+''' 1.0 [[nadh]][c]
+
** 1.0 [[h]][c] '''+''' 1.0 [[uaccg]][c] '''+''' 1.0 [[nadph]][c] '''=>''' 1.0 [[uamr]][c] '''+''' 1.0 [[nadp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 Glycolaldehyde[c] '''=>''' 2.0 H+[c] '''+''' 1.0 Glycolate C2H3O3[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c]
+
** 1.0 H+[c] '''+''' 1.0 UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''=>''' 1.0 UDP-N-acetylmuramate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0253]]
+
* [[EF2733]]
 +
** [[pantograph]]-[[l_plantarum_wcfs1]]
 +
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 +
* [[EF2489]]
 +
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''21''' reactions found over '''129''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
* [[map00520]]: [http://www.genome.jp/dbget-bin/www_bget?map00520 map00520]
−
** '''104''' reactions found over '''715''' reactions in the full pathway
+
** '''24''' reactions found over '''80''' reactions in the full pathway
 +
* [[map00550]]: [http://www.genome.jp/dbget-bin/www_bget?map00550 map00550]
 +
** '''10''' reactions found over '''27''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20001 20001]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12248 12248]
−
* BioCyc : META:GLYCOLALD-DEHYDROG-RXN
+
* BioCyc : META:UDPNACETYLMURAMATEDEHYDROG-RXN
−
* MetaNetX (MNX) Equation : MNXR100060
+
* MetaNetX (MNX) Equation : MNXR105041
−
* KEGG Reaction : R01333
+
* KEGG Reaction : R03192
−
* EC Number : 1.2.1.21
+
* EC Number : 1.3.1.98
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Glycolaldehyde dehydrogenase}}
+
{{#set: common name=UDP-N-acetylenolpyruvoylglucosamine reductase}}
−
{{#set: gene associated=EF0253}}
+
{{#set: gene associated=EF2733|EF2489}}
−
{{#set: in pathway=map00630|map01120}}
+
{{#set: in pathway=map01100|map00520|map00550}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=b_subtilis_subsp_subtilis_str168}}
 

Revision as of 18:37, 18 March 2018

Reaction UAPGR

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • UDP-N-acetylenolpyruvoylglucosamine reductase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H+[c] + 1.0 UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine[c] + 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] => 1.0 UDP-N-acetylmuramate[c] + 1.0 Nicotinamide adenine dinucleotide phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:UDPNACETYLMURAMATEDEHYDROG-RXN
  • MetaNetX (MNX) Equation : MNXR105041
  • KEGG Reaction : R03192
  • EC Number : 1.3.1.98




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