Difference between revisions of "Udpgalfur"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/EAR121x EAR121x] == * direction: ** LEFT-TO-RIGHT * common name: ** Enoyl-[acyl-carrier-protein] re...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DMBZIDS2 DMBZIDS2] == * direction: ** LEFT-TO-RIGHT * common name: ** 5,6-dimethylbenzimidazole syn...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/EAR121x EAR121x] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/DMBZIDS2 DMBZIDS2] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C12:1)
+
** 5,6-dimethylbenzimidazole synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[t3c5ddeceACP]][c] '''+''' 1.0 [[nadh]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[cddec5eACP]][c] '''+''' 1.0 [[nad]][c]
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** 1.0 [[o2]][c] '''+''' 1.0 [[fmnh2]][c] '''+''' 1.0 [[nadh]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[dialurate]][c] '''+''' 1.0 [[nad]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[e4p]][c] '''+''' 1.0 [[dmbzid]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 Trans-3-cis-5-dodecenoyl-[acyl-carrier protein][c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 H+[c] '''=>''' 1.0 Cis-dodec-5-enoyl-[acyl-carrier protein] (n-C12:1)[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c]
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** 1.0 O2 O2[c] '''+''' 1.0 Reduced FMN[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 H+[c] '''=>''' 1.0 Dialurate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 D-Erythrose 4-phosphate[c] '''+''' 1.0 5,6-Dimethylbenzimidazole[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
Genes have been associated with this reaction based on different elements listed below.
 
* [[EF0282]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
 
== Pathways  ==
 
== Pathways  ==
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
* [[map00061]]: [http://www.genome.jp/dbget-bin/www_bget?map00061 map00061]
 
** '''65''' reactions found over '''160''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
+
* Category: [[gap-filling]]
** [[pantograph]]:
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** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
*** [[e_coli_sstr_k12_substr_mg1655]]
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*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
* MetaNetX (MNX) Equation : MNXR97849
 
* EC Number : 1.3.1.9
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C12:1)}}
+
{{#set: common name=5,6-dimethylbenzimidazole synthase}}
{{#set: gene associated=EF0282}}
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{{#set: in pathway=}}
{{#set: in pathway=map01100|map00061}}
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{{#set: reconstruction category=gap-filling}}
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=meneco}}
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
+
{{#set: reconstruction comment=added for gapfilling}}

Revision as of 18:38, 18 March 2018

Reaction DMBZIDS2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5,6-dimethylbenzimidazole synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 O2 O2[c] + 1.0 Reduced FMN[c] + 1.0 Nicotinamide adenine dinucleotide - reduced[c] + 1.0 H+[c] => 1.0 Dialurate[c] + 1.0 Nicotinamide adenine dinucleotide[c] + 1.0 H2O H2O[c] + 1.0 D-Erythrose 4-phosphate[c] + 1.0 5,6-Dimethylbenzimidazole[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links