Difference between revisions of "RNA LPL"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DDGLK DDGLK] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-dehydro-3-deoxygluconokinase * Sy...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/3HAD80 3HAD80] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-hydroxyacyl-[acyl-carrier-prote...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/DDGLK DDGLK] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/3HAD80 3HAD80] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 2-dehydro-3-deoxygluconokinase
+
** 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C8:0)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[2ddglcn]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[h]][c] '''+''' 1.0 [[2ddg6p]][c] '''+''' 1.0 [[adp]][c]
+
** 1.0 [[3hoctACP]][c] '''=>''' 1.0 [[toct2eACP]][c] '''+''' 1.0 [[h2o]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 2-Dehydro-3-deoxy-D-gluconate[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 H+[c] '''+''' 1.0 2-Dehydro-3-deoxy-D-gluconate 6-phosphate[c] '''+''' 1.0 ADP C10H12N5O10P2[c]
+
** 1.0 (R)-3-Hydroxyoctanoyl-[acyl-carrier protein][c] '''=>''' 1.0 Trans-Oct-2-enoyl-[acyl-carrier protein][c] '''+''' 1.0 H2O H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0424]]
+
* [[EF2878]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
* [[EF0284]]
−
* [[EF2265]]
+
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
−
* [[EF0840]]
+
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 
−
** '''45''' reactions found over '''220''' reactions in the full pathway
 
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
+
* [[map00780]]: [http://www.genome.jp/dbget-bin/www_bget?map00780 map00780]
−
** '''26''' reactions found over '''69''' reactions in the full pathway
+
** '''26''' reactions found over '''67''' reactions in the full pathway
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
* [[map01212]]: [http://www.genome.jp/dbget-bin/www_bget?map01212 map01212]
−
** '''104''' reactions found over '''715''' reactions in the full pathway
+
** '''36''' reactions found over '''182''' reactions in the full pathway
 +
* [[map00061]]: [http://www.genome.jp/dbget-bin/www_bget?map00061 map00061]
 +
** '''65''' reactions found over '''160''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
*** [[l_plantarum_wcfs1]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* BioCyc : META:4.2.1.59-RXN
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14797 14797]
+
* MetaNetX (MNX) Equation : MNXR94888
−
* BioCyc : META:DEOXYGLUCONOKIN-RXN
+
* KEGG Reaction : R04537
−
* MetaNetX (MNX) Equation : MNXR97216
+
* EC Number : 2.3.1.-
−
* KEGG Reaction : R01541
+
−
* EC Number : 2.7.1.178
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=2-dehydro-3-deoxygluconokinase}}
+
{{#set: common name=3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C8:0)}}
−
{{#set: gene associated=EF0424|EF2265|EF0840}}
+
{{#set: gene associated=EF2878|EF0284}}
−
{{#set: in pathway=map01200|map01100|map00030|map01120}}
+
{{#set: in pathway=map01100|map00780|map01212|map00061}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
 

Revision as of 18:39, 18 March 2018

Reaction 3HAD80

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C8:0)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 (R)-3-Hydroxyoctanoyl-[acyl-carrier protein][c] => 1.0 Trans-Oct-2-enoyl-[acyl-carrier protein][c] + 1.0 H2O H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • BioCyc : META:4.2.1.59-RXN
  • MetaNetX (MNX) Equation : MNXR94888
  • KEGG Reaction : R04537
  • EC Number : 2.3.1.-
"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C8:0)" cannot be used as a page name in this wiki.



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