Difference between revisions of "Ibcoa"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GPDDA3 GPDDA3] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycerophosphodiester phosphodies...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NOX2 NOX2] == * direction: ** LEFT-TO-RIGHT * common name: ** NADH oxidase H2O forming * Synonym(s...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/GPDDA3 GPDDA3] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/NOX2 NOX2] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** Glycerophosphodiester phosphodiesterase (Glycerophosphoserine)
+
** NADH oxidase H2O forming
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[g3ps]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[h]][c] '''+''' 1.0 [[ser__L]][c] '''+''' 1.0 [[glyc3p]][c]
+
** 2.0 [[h]][c] '''+''' 1.0 [[o2]][c] '''+''' 2.0 [[nadh]][c] '''=>''' 2.0 [[nad]][c] '''+''' 2.0 [[h2o]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 Glycerophosphoserine[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 H+[c] '''+''' 1.0 L-Serine[c] '''+''' 1.0 Glycerol 3-phosphate[c]
+
** 2.0 H+[c] '''+''' 1.0 O2 O2[c] '''+''' 2.0 Nicotinamide adenine dinucleotide - reduced[c] '''=>''' 2.0 Nicotinamide adenine dinucleotide[c] '''+''' 2.0 H2O H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF2163]]
+
* [[EF2989]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
* [[EF1586]]
* [[EF0779]]
+
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
== Pathways  ==
 
== Pathways  ==
* [[map00564]]: [http://www.genome.jp/dbget-bin/www_bget?map00564 map00564]
 
** '''19''' reactions found over '''134''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
+
* Category: [[orthology]]
** [[pantograph]]:
+
** Source: [[orthology-l_plantarum_wcfs1]]
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
*** [[l_plantarum_wcfs1]]
+
 
== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29875 29875]
 
* MetaNetX (MNX) Equation : MNXR100412
 
* EC Number : 3.1.4.46
 
* BioCyc : META:RXN-14136
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=Glycerophosphodiester phosphodiesterase (Glycerophosphoserine)}}
+
{{#set: common name=NADH oxidase H2O forming }}
{{#set: gene associated=EF2163|EF0779}}
+
{{#set: gene associated=EF2989|EF1586}}
{{#set: in pathway=map00564}}
+
{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1}}
 

Revision as of 19:39, 18 March 2018

Reaction NOX2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • NADH oxidase H2O forming
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2.0 H+[c] + 1.0 O2 O2[c] + 2.0 Nicotinamide adenine dinucleotide - reduced[c] => 2.0 Nicotinamide adenine dinucleotide[c] + 2.0 H2O H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links