Difference between revisions of "Udcp"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ADPDS_manual ADPDS_manual] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == *...") |
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CSND CSND] == * direction: ** LEFT-TO-RIGHT * common name: ** Cytosine deaminase * Synonym(s): ==...") |
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| Line 1: | Line 1: | ||
[[Category:Reaction]] | [[Category:Reaction]] | ||
| − | == Reaction [http://bigg.ucsd.edu/universal/reactions/ | + | == Reaction [http://bigg.ucsd.edu/universal/reactions/CSND CSND] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| + | * common name: | ||
| + | ** Cytosine deaminase | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1.0 [[ | + | ** 1.0 [[csn]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[nh4]][c] '''+''' 1.0 [[ura]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1.0 | + | ** 1.0 Cytosine[c] '''+''' 1.0 H+[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Ammonium[c] '''+''' 1.0 Uracil[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * [[ | + | * [[EF0390]] |
| − | ** | + | ** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]] |
| + | * [[EF2206]] | ||
| + | ** [[pantograph]]-[[l_plantarum_wcfs1]] | ||
== Pathways == | == Pathways == | ||
| + | * [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100] | ||
| + | ** '''460''' reactions found over '''2349''' reactions in the full pathway | ||
| + | * [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240] | ||
| + | ** '''82''' reactions found over '''244''' reactions in the full pathway | ||
| + | * [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330] | ||
| + | ** '''22''' reactions found over '''149''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| − | * [[ | + | * Category: [[orthology]] |
| − | ** [[ | + | ** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]] |
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-l_plantarum_wcfs1]] | ||
| + | *** Tool: [[pantograph]] | ||
== External links == | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20605 20605] | ||
| + | * BioCyc : META:CYTDEAM-RXN | ||
| + | * MetaNetX (MNX) Equation : MNXR96927 | ||
| + | * KEGG Reaction : R00974 | ||
| + | * EC Number : 3.5.4.1 | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | {{#set: gene associated= | + | {{#set: common name=Cytosine deaminase}} |
| − | {{#set: in pathway=}} | + | {{#set: gene associated=EF0390|EF2206}} |
| − | {{#set: reconstruction category= | + | {{#set: in pathway=map01100|map00240|map00330}} |
| − | {{#set: reconstruction source= | + | {{#set: reconstruction category=orthology}} |
| + | {{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}} | ||
| + | {{#set: reconstruction tool=pantograph}} | ||
Revision as of 18:40, 18 March 2018
Contents
Reaction CSND
- direction:
- LEFT-TO-RIGHT
- common name:
- Cytosine deaminase
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1.0 Cytosine[c] + 1.0 H+[c] + 1.0 H2O H2O[c] => 1.0 Ammonium[c] + 1.0 Uracil[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
Pathways
- map01100: map01100
- 460 reactions found over 2349 reactions in the full pathway
- map00240: map00240
- 82 reactions found over 244 reactions in the full pathway
- map00330: map00330
- 22 reactions found over 149 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-e_coli_sstr_k12_substr_mg1655
- Tool: pantograph
- Source: orthology-l_plantarum_wcfs1
- Tool: pantograph
- Source: orthology-e_coli_sstr_k12_substr_mg1655
External links
- RHEA:
- BioCyc : META:CYTDEAM-RXN
- MetaNetX (MNX) Equation : MNXR96927
- KEGG Reaction : R00974
- EC Number : 3.5.4.1
