Difference between revisions of "Ocdacp"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PRAGSr PRAGSr] == * direction: ** REVERSIBLE * common name: ** Phosphoribosylglycinamide synthase *...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TransportSeed_nh3 TransportSeed_nh3] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Fo...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/PRAGSr PRAGSr] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/TransportSeed_nh3 TransportSeed_nh3] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
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** LEFT-TO-RIGHT
−
* common name:
+
−
** Phosphoribosylglycinamide synthase
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* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[atp]][c] '''+''' 1.0 [[gly]][c] '''+''' 1.0 [[pram]][c] '''<=>''' 1.0 [[gar]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[pi]][c]
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** 1.0 [[nh3]][e] '''=>''' 1.0 [[nh3]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 Glycine[c] '''+''' 1.0 5-Phospho-beta-D-ribosylamine[c] '''<=>''' 1.0 N1-(5-Phospho-D-ribosyl)glycinamide[c] '''+''' 1.0 H+[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 Phosphate[c]
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** 1.0 Ammonia[e] '''=>''' 1.0 Ammonia[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF1777]]
 
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
−
** '''135''' reactions found over '''694''' reactions in the full pathway
 
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
 
−
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 
−
** '''97''' reactions found over '''298''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
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* Category: [[manual]]
−
** [[pantograph]]:
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** Source: [[manual-import_from_medium]]
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*** [[e_coli_sstr_k12_substr_mg1655]]
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*** Comment: [[added to manage seeds from extracellular to cytosol compartment]]
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*** [[l_plantarum_wcfs1]]
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−
*** [[b_subtilis_subsp_subtilis_str168]]
+
 
== External links  ==
 
== External links  ==
−
* BioCyc : META:GLYRIBONUCSYN-RXN
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{{#set: direction=LEFT-TO-RIGHT}}
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* MetaNetX (MNX) Equation : MNXR103139
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{{#set: in pathway=}}
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* KEGG Reaction : R04144
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{{#set: reconstruction category=manual}}
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* EC Number : 6.3.4.13
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{{#set: reconstruction source=manual-import_from_medium}}
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{{#set: direction=REVERSIBLE}}
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{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
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{{#set: common name=Phosphoribosylglycinamide synthase}}
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−
{{#set: gene associated=EF1777}}
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−
{{#set: in pathway=map01100|map01130|map01110|map00230}}
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−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1|b_subtilis_subsp_subtilis_str168}}
+

Revision as of 18:40, 18 March 2018

Reaction TransportSeed_nh3

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Ammonia[e] => 1.0 Ammonia[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

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