Difference between revisions of "Doxopa"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/KAS15 KAS15] == * direction: ** LEFT-TO-RIGHT * common name: ** Beta-ketoacyl-ACP synthase (2) * Sy...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/G5SD G5SD] == * direction: ** LEFT-TO-RIGHT * common name: ** Glutamate-5-semialdehyde dehydrogenas...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/KAS15 KAS15] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/G5SD G5SD] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Beta-ketoacyl-ACP synthase (2)
+
** Glutamate-5-semialdehyde dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[accoa]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[malACP]][c] '''=>''' 1.0 [[actACP]][c] '''+''' 1.0 [[co2]][c] '''+''' 1.0 [[coa]][c]
+
** 1.0 [[glu5p]][c] '''+''' 1.0 [[nadph]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[pi]][c] '''+''' 1.0 [[glu5sa]][c] '''+''' 1.0 [[nadp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Acetyl-CoA[c] '''+''' 1.0 H+[c] '''+''' 1.0 Malonyl-[acyl-carrier protein][c] '''=>''' 1.0 Acetoacetyl-ACP[c] '''+''' 1.0 CO2 CO2[c] '''+''' 1.0 Coenzyme A[c]
+
** 1.0 L-Glutamate 5-phosphate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 1.0 H+[c] '''=>''' 1.0 Phosphate[c] '''+''' 1.0 L-Glutamate 5-semialdehyde[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF2885]]
+
* [[EF0037]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01212]]: [http://www.genome.jp/dbget-bin/www_bget?map01212 map01212]
+
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
** '''36''' reactions found over '''182''' reactions in the full pathway
+
** '''179''' reactions found over '''1054''' reactions in the full pathway
−
* [[map00061]]: [http://www.genome.jp/dbget-bin/www_bget?map00061 map00061]
+
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
−
** '''65''' reactions found over '''160''' reactions in the full pathway
+
** '''22''' reactions found over '''149''' reactions in the full pathway
 +
* [[map00332]]: [http://www.genome.jp/dbget-bin/www_bget?map00332 map00332]
 +
** '''2''' reactions found over '''14''' reactions in the full pathway
 +
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 +
** '''56''' reactions found over '''228''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
−
*** [[l_plantarum_wcfs1]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* BioCyc : META:2.3.1.180-RXN
+
* RHEA:
−
* MetaNetX (MNX) Equation : MNXR100913
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19541 19541]
−
* KEGG Reaction : R10707
+
* BioCyc : META:GLUTSEMIALDEHYDROG-RXN
−
* EC Number : 2.3.1.180
+
* MetaNetX (MNX) Equation : MNXR99896
 +
* KEGG Reaction : R03313
 +
* EC Number : 1.2.1.41
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Beta-ketoacyl-ACP synthase (2)}}
+
{{#set: common name=Glutamate-5-semialdehyde dehydrogenase}}
−
{{#set: gene associated=EF2885}}
+
{{#set: gene associated=EF0037}}
−
{{#set: in pathway=map01100|map01212|map00061}}
+
{{#set: in pathway=map01100|map01110|map00330|map00332|map01230|map01130}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655|l_plantarum_wcfs1}}
 

Revision as of 18:42, 18 March 2018

Reaction G5SD

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glutamate-5-semialdehyde dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 L-Glutamate 5-phosphate[c] + 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] + 1.0 H+[c] => 1.0 Phosphate[c] + 1.0 L-Glutamate 5-semialdehyde[c] + 1.0 Nicotinamide adenine dinucleotide phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:GLUTSEMIALDEHYDROG-RXN
  • MetaNetX (MNX) Equation : MNXR99896
  • KEGG Reaction : R03313
  • EC Number : 1.2.1.41




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