Difference between revisions of "HISTRS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NTD3 NTD3] == * direction: ** LEFT-TO-RIGHT * common name: ** 5'-nucleotidase (dCMP) * Synonym(s):...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ADMDC ADMDC] == * direction: ** LEFT-TO-RIGHT * common name: ** Adenosylmethionine decarboxylase *...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/NTD3 NTD3] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/ADMDC ADMDC] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 5'-nucleotidase (dCMP)
+
** Adenosylmethionine decarboxylase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[dcmp]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[pi]][c] '''+''' 1.0 [[dcyt]][c]
+
** 1.0 [[h]][c] '''+''' 1.0 [[amet]][c] '''=>''' 1.0 [[ametam]][c] '''+''' 1.0 [[co2]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 DCMP C9H12N3O7P[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Phosphate[c] '''+''' 1.0 Deoxycytidine[c]
+
** 1.0 H+[c] '''+''' 1.0 S-Adenosyl-L-methionine[c] '''=>''' 1.0 S-Adenosylmethioninamine[c] '''+''' 1.0 CO2 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF0062]]
 
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
+
* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
−
** '''82''' reactions found over '''244''' reactions in the full pathway
+
** '''25''' reactions found over '''135''' reactions in the full pathway
 +
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
 +
** '''22''' reactions found over '''149''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29363 29363]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15981 15981]
−
* BioCyc : META:RXN0-5292
+
* EC Number : 4.1.1.50
−
* MetaNetX (MNX) Equation : MNXR102033
+
* MetaNetX (MNX) Equation : MNXR95455
−
* KEGG Reaction : R01664
+
* KEGG Reaction : R00178
−
* EC Number : 3.1.3.5
+
* BioCyc : META:SAMDECARB-RXN
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=5'-nucleotidase (dCMP)}}
+
{{#set: common name=Adenosylmethionine decarboxylase}}
−
{{#set: gene associated=EF0062}}
+
{{#set: in pathway=map01100|map00270|map00330}}
−
{{#set: in pathway=map01100|map00240}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction source=b_subtilis_subsp_subtilis_str168}}
+
{{#set: reconstruction comment=added for gapfilling}}

Revision as of 18:44, 18 March 2018

Reaction ADMDC

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Adenosylmethionine decarboxylase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H+[c] + 1.0 S-Adenosyl-L-methionine[c] => 1.0 S-Adenosylmethioninamine[c] + 1.0 CO2 CO2[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 4.1.1.50
  • MetaNetX (MNX) Equation : MNXR95455
  • KEGG Reaction : R00178
  • BioCyc : META:SAMDECARB-RXN




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