Difference between revisions of "UGMDDS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/E4PD E4PD] == * direction: ** REVERSIBLE * common name: ** Erythrose 4-phosphate dehydrogenase * Sy...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CDPMEK CDPMEK] == * direction: ** LEFT-TO-RIGHT * common name: ** 4-(cytidine 5'-diphospho)-2-C-met...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/E4PD E4PD] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/CDPMEK CDPMEK] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Erythrose 4-phosphate dehydrogenase
+
** 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h2o]][c] '''+''' 1.0 [[e4p]][c] '''+''' 1.0 [[nad]][c] '''<=>''' 1.0 [[nadh]][c] '''+''' 2.0 [[h]][c] '''+''' 1.0 [[4per]][c]
+
** 1.0 [[atp]][c] '''+''' 1.0 [[4c2me]][c] '''=>''' 1.0 [[h]][c] '''+''' 1.0 [[2p4c2me]][c] '''+''' 1.0 [[adp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H2O H2O[c] '''+''' 1.0 D-Erythrose 4-phosphate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''<=>''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 2.0 H+[c] '''+''' 1.0 4-Phospho-D-erythronate[c]
+
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''=>''' 1.0 H+[c] '''+''' 1.0 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''+''' 1.0 ADP C10H12N5O10P2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1964]]
+
* [[EF0051]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** [[pantograph]]-[[l_plantarum_wcfs1]]
−
* [[EF1526]]
+
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
 +
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00750]]: [http://www.genome.jp/dbget-bin/www_bget?map00750 map00750]
+
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
−
** '''2''' reactions found over '''25''' reactions in the full pathway
+
** '''135''' reactions found over '''694''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00900]]: [http://www.genome.jp/dbget-bin/www_bget?map00900 map00900]
 +
** '''14''' reactions found over '''67''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12056 12056]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18437 18437]
−
* BioCyc : META:ERYTH4PDEHYDROG-RXN
+
* BioCyc : META:2.7.1.148-RXN
−
* MetaNetX (MNX) Equation : MNXR97842
+
* MetaNetX (MNX) Equation : MNXR96558
−
* KEGG Reaction : R01825
+
* KEGG Reaction : R05634
−
* EC Number : 1.2.1.72
+
* EC Number : 2.7.1.148
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Erythrose 4-phosphate dehydrogenase}}
+
{{#set: common name=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase}}
−
{{#set: gene associated=EF1964|EF1526}}
+
{{#set: gene associated=EF0051}}
−
{{#set: in pathway=map01100|map00750}}
+
{{#set: in pathway=map01100|map01130|map01110|map00900}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
 

Revision as of 18:46, 18 March 2018

Reaction CDPMEK

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 ATP C10H12N5O13P3[c] + 1.0 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] => 1.0 H+[c] + 1.0 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] + 1.0 ADP C10H12N5O10P2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:2.7.1.148-RXN
  • MetaNetX (MNX) Equation : MNXR96558
  • KEGG Reaction : R05634
  • EC Number : 2.7.1.148




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