Difference between revisions of "IPPS"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00650 map00650] == * common_name: ** Butanoate metabolism * Synonym(s): == Reaction(s) found == '...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/IPPS IPPS] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-isopropylmalate synthase * Synonym(...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00650 map00650] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/IPPS IPPS] ==
−
* common_name:
+
* direction:
−
** Butanoate metabolism
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** 2-isopropylmalate synthase
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''14''' reactions found over '''156''' reactions in the full pathway
+
* With identifiers:
−
* [[ACACT1r]]
+
** 1.0 [[accoa]][c] '''+''' 1.0 [[3mob]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[3c3hmp]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[coa]][c]
−
** 1 associated gene(s):
+
* With common name(s):
−
*** [[EF1364]]
+
** 1.0 Acetyl-CoA[c] '''+''' 1.0 3-Methyl-2-oxobutanoate[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 3-Carboxy-3-hydroxy-4-methylpentanoate[c] '''+''' 1.0 H+[c] '''+''' 1.0 Coenzyme A[c]
−
** 2 reconstruction source(s) associated:
+
 
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
== Genes associated with this reaction  ==
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[ACALD]]
+
* Gene: [[EF3317]]
−
** 1 associated gene(s):
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** [[EF0900]]
+
== Pathways  ==
−
** 2 reconstruction source(s) associated:
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
*** [[orthology-l_plantarum_wcfs1]]
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
* [[ACHBS]]
+
** '''179''' reactions found over '''1054''' reactions in the full pathway
−
** 1 associated gene(s):
+
* [[map00290]]: [http://www.genome.jp/dbget-bin/www_bget?map00290 map00290]
−
*** [[EF1213]]
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** '''9''' reactions found over '''49''' reactions in the full pathway
−
** 2 reconstruction source(s) associated:
+
* [[map01210]]: [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210]
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
** '''14''' reactions found over '''80''' reactions in the full pathway
−
*** [[orthology-l_plantarum_wcfs1]]
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* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
−
* [[ACLDC]]
+
** '''56''' reactions found over '''228''' reactions in the full pathway
−
** 1 associated gene(s):
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* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
−
*** [[EF1214]]
+
** '''31''' reactions found over '''163''' reactions in the full pathway
−
** 2 reconstruction source(s) associated:
+
== Reconstruction information  ==
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
* Category: [[orthology]]
−
*** [[orthology-l_plantarum_wcfs1]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
* [[ACLS]]
+
*** Tool: [[pantograph]]
−
** 1 associated gene(s):
+
−
*** [[EF1213]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[ASP1DC]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1858]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[BUTKr]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1662]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
* [[GLUDC]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
−
* [[HMGCOAS]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1363]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[OBTFL]]
+
−
** 2 associated gene(s):
+
−
*** [[EF1612]]
+
−
*** [[EF1613]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
* [[PBUTT]]
+
−
** 2 associated gene(s):
+
−
*** [[EF1663]]
+
−
*** [[EF0949]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
* [[PFL]]
+
−
** 2 associated gene(s):
+
−
*** [[EF1612]]
+
−
*** [[EF1613]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[SSALx]]
+
−
** 1 associated gene(s):
+
−
*** [[EF0253]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[SSALy]]
+
−
** 1 associated gene(s):
+
−
*** [[EF0253]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
== Reaction(s) not found ==
+
−
* [http://bigg.ucsd.edu/universal/reactions/3HBCDm 3HBCDm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3HOPCD 3HOPCD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AACOAR_syn AACOAR_syn]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AACOAT AACOAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ABTA ABTA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ABTArm ABTArm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACCT ACACCT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT2r ACACT2r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT3r ACACT3r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT4r ACACT4r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT7r ACACT7r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACALDh ACALDh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACAS_2ahbut ACAS_2ahbut]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACHBSm ACHBSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACLSm ACLSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACOA40OR ACOA40OR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACOAD1 ACOAD1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACOAD1f ACOAD1f]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACOAD1fm ACOAD1fm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACOAD2 ACOAD2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACTD ACTD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APLh APLh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APLm APLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ARGDh ARGDh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BDH BDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BDHm BDHm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BNORh BNORh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BTCOARx BTCOARx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BTDD_RR BTDD_RR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BTS BTS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BTS_nadph BTS_nadph]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BUTCT BUTCT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1 ECOAH1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1_1 ECOAH1_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1m ECOAH1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1x ECOAH1x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9ir ECOAH9ir]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FACOAL40im FACOAL40im]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FRD FRD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FRDcm FRDcm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FRDm FRDm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GHBDHx GHBDHx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GHBDHy GHBDHy]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1 HACD1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD10p HACD10p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1_1 HACD1_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1i HACD1i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1m HACD1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1x HACD1x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD2 HACD2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD2_1 HACD2_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD2i HACD2i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD2m HACD2m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD3 HACD3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD3_1 HACD3_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD3i HACD3i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD3m HACD3m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD4 HACD4]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD4i HACD4i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD4m HACD4m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD4p HACD4p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD5 HACD5]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD5i HACD5i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD5m HACD5m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD5p HACD5p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD6 HACD6]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD6i HACD6i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD6m HACD6m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD6p HACD6p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD7 HACD7]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD7i HACD7i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD7m HACD7m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD7p HACD7p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD9 HACD9]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD9m HACD9m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACDp HACDp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HADPCOADH3 HADPCOADH3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HBCHLR HBCHLR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp HBCO_nadp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp_m HBCO_nadp_m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HBNOx HBNOx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HIBDkt HIBDkt]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HMGCOASm HMGCOASm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HMGL HMGL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HMGL_1 HMGL_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HMGLm HMGLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HMGLx HMGLx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HMNO HMNO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HXCT HXCT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MACCOAT MACCOAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MALDDH MALDDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MALEI MALEI]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MHGS MHGS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/OCOAT1 OCOAT1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/OCOAT1m OCOAT1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PCFPTh PCFPTh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PCFPTm PCFPTm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PFLACTm PFLACTm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PFLh PFLh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPATDh PPATDh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RHACOAR100 RHACOAR100]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RHACOAR140 RHACOAR140]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RHACOAR60 RHACOAR60]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RHACOAR80 RHACOAR80]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SSALxm SSALxm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SSCOARy SSCOARy]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SSNOh SSNOh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCD1 SUCD1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCD1m SUCD1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCD2_u6m SUCD2_u6m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCD3_u6m SUCD3_u6m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCDHh SUCDHh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCOAACTr SUCOAACTr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/VACOAI VACOAI]
+
 
== External links  ==
 
== External links  ==
−
{{#set: common_name=Butanoate metabolism}}
+
* RHEA:
−
{{#set: reaction found=14}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21524 21524]
−
{{#set: total reaction=156}}
+
* BioCyc : META:2-ISOPROPYLMALATESYN-RXN
−
{{#set: completion rate=9.0}}
+
* MetaNetX (MNX) Equation : MNXR100879
 +
* KEGG Reaction : R01213
 +
* EC Number : 2.3.3.13
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=2-isopropylmalate synthase}}
 +
{{#set: gene associated=EF3317}}
 +
{{#set: in pathway=map01100|map01110|map00290|map01210|map01230|map00620}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-b_subtilis_subsp_subtilis_str168}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:06, 21 March 2018

Reaction IPPS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 2-isopropylmalate synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Acetyl-CoA[c] + 1.0 3-Methyl-2-oxobutanoate[c] + 1.0 H2O H2O[c] => 1.0 3-Carboxy-3-hydroxy-4-methylpentanoate[c] + 1.0 H+[c] + 1.0 Coenzyme A[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:2-ISOPROPYLMALATESYN-RXN
  • MetaNetX (MNX) Equation : MNXR100879
  • KEGG Reaction : R01213
  • EC Number : 2.3.3.13




Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=IPPS&oldid=8505"