Difference between revisions of "UAPGR"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00640 map00640] == * common_name: ** Propanoate metabolism * Synonym(s): == Reaction(s) found ==...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/UAPGR UAPGR] == * direction: ** LEFT-TO-RIGHT * common name: ** UDP-N-acetylenolpyruvoylglucosamine...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00640 map00640] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/UAPGR UAPGR] ==
−
* common_name:
+
* direction:
−
** Propanoate metabolism
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** UDP-N-acetylenolpyruvoylglucosamine reductase
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''15''' reactions found over '''143''' reactions in the full pathway
+
* With identifiers:
−
* [[13PPDH]]
+
** 1.0 [[h]][c] '''+''' 1.0 [[uaccg]][c] '''+''' 1.0 [[nadph]][c] '''=>''' 1.0 [[uamr]][c] '''+''' 1.0 [[nadp]][c]
−
** 1 associated gene(s):
+
* With common name(s):
−
*** [[EF1635]]
+
** 1.0 H+[c] '''+''' 1.0 UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''=>''' 1.0 UDP-N-acetylmuramate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate[c]
−
** 1 reconstruction source(s) associated:
+
 
−
*** [[orthology-l_plantarum_wcfs1]]
+
== Genes associated with this reaction  ==
−
* [[2HBO]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** 0 associated gene:
+
* Gene: [[EF2733]]
−
** 1 reconstruction source(s) associated:
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
* [[ACACT1r]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
** 1 associated gene(s):
+
* Gene: [[EF2489]]
−
*** [[EF1364]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
** 2 reconstruction source(s) associated:
+
== Pathways  ==
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[ACCOAC]]
+
* [[map00520]]: [http://www.genome.jp/dbget-bin/www_bget?map00520 map00520]
−
** 5 associated gene(s):
+
** '''24''' reactions found over '''80''' reactions in the full pathway
−
*** [[EF2877]]
+
* [[map00550]]: [http://www.genome.jp/dbget-bin/www_bget?map00550 map00550]
−
*** [[EF2876]]
+
** '''10''' reactions found over '''27''' reactions in the full pathway
−
*** [[EF2879]]
+
== Reconstruction information  ==
−
*** [[EF3240]]
+
* Category: [[orthology]]
−
*** [[EF2875]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
** 3 reconstruction source(s) associated:
+
*** Tool: [[pantograph]]
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
*** Tool: [[pantograph]]
−
*** [[orthology-l_plantarum_wcfs1]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
* [[ACKr]]
+
*** Tool: [[pantograph]]
−
** 1 associated gene(s):
+
−
*** [[EF1983]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[ALR2]]
+
−
** 2 associated gene(s):
+
−
*** [[EF1138]]
+
−
*** [[EF0629]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
* [[GLYCDx]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1358]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
* [[LCARS]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1635]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
* [[LDH_L]]
+
−
** 1 associated gene(s):
+
−
*** [[EF0255]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[MGSA]]
+
−
** 1 associated gene(s):
+
−
*** [[EF0939]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
* [[OBTFL]]
+
−
** 2 associated gene(s):
+
−
*** [[EF1612]]
+
−
*** [[EF1613]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
* [[PFL]]
+
−
** 2 associated gene(s):
+
−
*** [[EF1612]]
+
−
*** [[EF1613]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
* [[PPAKr]]
+
−
** 1 associated gene(s):
+
−
*** [[EF1983]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
* [[PTA2]]
+
−
** 1 associated gene(s):
+
−
*** [[EF0949]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
* [[PTAr]]
+
−
** 1 associated gene(s):
+
−
*** [[EF0949]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
+
−
*** [[orthology-l_plantarum_wcfs1]]
+
−
== Reaction(s) not found ==
+
−
* [http://bigg.ucsd.edu/universal/reactions/3HBCOAHL 3HBCOAHL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3HBCOAHLm 3HBCOAHLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3HPPD 3HPPD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/4M2OPLOXRD 4M2OPLOXRD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ABTA ABTA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ABTArm ABTArm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACCT ACACCT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT2r ACACT2r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT3r ACACT3r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT4r ACACT4r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT7r ACACT7r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACCOAC_1 ACCOAC_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACCOACrm ACCOACrm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACCOAL ACCOAL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACCOALm ACCOALm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACCOAhi ACCOAhi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACKrh ACKrh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACKrm ACKrm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACS ACS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACS2 ACS2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSm ACSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSp ACSp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ADCim ADCim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCD20y ALCD20y]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCD21_D ALCD21_D]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCD3ir ALCD3ir]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APAT2rm APAT2rm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APATr APATr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APPTh APPTh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APPTm APPTm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BNORh BNORh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BTCOARx BTCOARx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BUTCT BUTCT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DHRT_2mbcoa DHRT_2mbcoa]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DHRT_ivcoa DHRT_ivcoa]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9ir ECOAH9ir]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCC2cm GCC2cm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCCc GCCc]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCCcm GCCcm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HIBH HIBH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HXCT HXCT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ITCOAL1m ITCOAL1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ITCOALm ITCOALm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LALDO3 LALDO3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LCARR LCARR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LCD LCD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LDH_Lm LDH_Lm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LLDHh LLDHh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MACCOAT MACCOAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MCD MCD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MCDC MCDC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MCDm MCDm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MCDp MCDp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MCITD MCITD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MCITL2 MCITL2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MCITL2m MCITL2m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MCITLm MCITLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MCITS MCITS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MCITSm MCITSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MCLORi MCLORi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MICITDr MICITDr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MMCD MMCD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MMCDm MMCDm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MMCDp MMCDp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MME MME]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MMEm MMEm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MMM2 MMM2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MMMm MMMm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MMSAD1 MMSAD1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MMSAD1m MMSAD1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MMSAD2 MMSAD2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MMSAD3 MMSAD3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MMSAD3m MMSAD3m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MMSDH MMSDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MMTSAO MMTSAO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MOD MOD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MOD_3mhtpp MOD_3mhtpp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MOD_3mop MOD_3mop]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MOD_4mop MOD_4mop]
+
−
* [http://bigg.ucsd.edu/universal/reactions/OCDOR OCDOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PCFPTh PCFPTh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PCFPTm PCFPTm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PCPPTh PCPPTh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PCPPTm PCPPTm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHcr PDHcr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHe3hr PDHe3hr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PFLACTm PFLACTm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PFLh PFLh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPACOALh PPACOALh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPACOALm PPACOALm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPCOAC PPCOAC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPCOACm PPCOACm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPCSCT PPCSCT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPDD PPDD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PTArh PTArh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PTArm PTArm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCLm SUCLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCOAS SUCOAS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCOAS1m SUCOAS1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCOASm SUCOASm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
+
 
== External links  ==
 
== External links  ==
−
{{#set: common_name=Propanoate metabolism}}
+
* RHEA:
−
{{#set: reaction found=15}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12248 12248]
−
{{#set: total reaction=143}}
+
* BioCyc : META:UDPNACETYLMURAMATEDEHYDROG-RXN
−
{{#set: completion rate=10.0}}
+
* MetaNetX (MNX) Equation : MNXR105041
 +
* KEGG Reaction : R03192
 +
* EC Number : 1.3.1.98
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=UDP-N-acetylenolpyruvoylglucosamine reductase}}
 +
{{#set: gene associated=EF2733|EF2489}}
 +
{{#set: in pathway=map01100|map00520|map00550}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:24, 21 March 2018

Reaction UAPGR

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • UDP-N-acetylenolpyruvoylglucosamine reductase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H+[c] + 1.0 UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine[c] + 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] => 1.0 UDP-N-acetylmuramate[c] + 1.0 Nicotinamide adenine dinucleotide phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:UDPNACETYLMURAMATEDEHYDROG-RXN
  • MetaNetX (MNX) Equation : MNXR105041
  • KEGG Reaction : R03192
  • EC Number : 1.3.1.98




Retrieved from "http://gem-aureme.irisa.fr/efaecV583/index.php?title=UAPGR&oldid=10037"