Difference between revisions of "GLUDC"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00051 map00051] == * common_name: ** Fructose and mannose metabolism * Synonym(s): == Reaction(s)...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLUDC GLUDC] == * direction: ** LEFT-TO-RIGHT * common name: ** Glutamate Decarboxylase * Synonym(s...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00051 map00051] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/GLUDC GLUDC] ==
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* common_name:
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* direction:
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** Fructose and mannose metabolism
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** LEFT-TO-RIGHT
 +
* common name:
 +
** Glutamate Decarboxylase
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''22''' reactions found over '''63''' reactions in the full pathway
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* With identifiers:
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* [[FBA]]
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** 1.0 [[h]][c] '''+''' 1.0 [[glu__L]][c] '''=>''' 1.0 [[4abut]][c] '''+''' 1.0 [[co2]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[EF1167]]
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** 1.0 H+[c] '''+''' 1.0 L-Glutamate[c] '''=>''' 1.0 4-Aminobutanoate[c] '''+''' 1.0 CO2 CO2[c]
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** 3 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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== Genes associated with this reaction  ==
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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== Pathways  ==
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*** [[orthology-l_plantarum_wcfs1]]
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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* [[FBA2]]
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** '''460''' reactions found over '''2349''' reactions in the full pathway
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** 1 associated gene(s):
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
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*** [[EF1167]]
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** '''179''' reactions found over '''1054''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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** '''104''' reactions found over '''715''' reactions in the full pathway
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* [[FBP]]
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* [[map00650]]: [http://www.genome.jp/dbget-bin/www_bget?map00650 map00650]
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** 1 associated gene(s):
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** '''14''' reactions found over '''156''' reactions in the full pathway
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*** [[EF1503]]
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* [[map00430]]: [http://www.genome.jp/dbget-bin/www_bget?map00430 map00430]
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** 1 reconstruction source(s) associated:
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** '''5''' reactions found over '''24''' reactions in the full pathway
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[map00250]]: [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250]
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* [[FRUK]]
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** '''22''' reactions found over '''93''' reactions in the full pathway
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** 2 associated gene(s):
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* [[map00410]]: [http://www.genome.jp/dbget-bin/www_bget?map00410 map00410]
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*** [[EF0718]]
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** '''8''' reactions found over '''91''' reactions in the full pathway
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*** [[EF0693]]
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== Reconstruction information  ==
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** 3 reconstruction source(s) associated:
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* Category: [[gap-filling]]
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** Tool: [[meneco]]
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*** [[orthology-l_plantarum_wcfs1]]
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**** Comment: [[added for gapfilling]]
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* [[GDPMNP]]
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** 1 associated gene(s):
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−
*** [[EF2696]]
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−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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−
* [[HEX7]]
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−
** 4 associated gene(s):
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−
*** [[EF0840]]
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*** [[EF0424]]
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*** [[EF2265]]
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−
*** [[EF1179]]
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** 2 reconstruction source(s) associated:
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−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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−
*** [[orthology-l_plantarum_wcfs1]]
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−
* [[M1PD]]
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** 1 associated gene(s):
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−
*** [[EF0413]]
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−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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−
*** [[orthology-l_plantarum_wcfs1]]
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−
* [[MAN6PI]]
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** 1 associated gene(s):
+
−
*** [[EF2589]]
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−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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−
*** [[orthology-l_plantarum_wcfs1]]
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−
* [[PFK]]
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** 4 associated gene(s):
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−
*** [[EF1045]]
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*** [[EF1806]]
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*** [[EF0718]]
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*** [[EF0693]]
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** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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−
*** [[orthology-l_plantarum_wcfs1]]
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* [[PFK_2]]
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** 1 associated gene(s):
+
−
*** [[EF1045]]
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−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[PFK_3]]
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** 1 associated gene(s):
+
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*** [[EF1045]]
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−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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−
* [[PMANM]]
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** 2 associated gene(s):
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*** [[EF2425]]
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*** [[EF0677]]
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** 3 reconstruction source(s) associated:
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−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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−
*** [[orthology-l_plantarum_wcfs1]]
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* [[RMI]]
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** 1 associated gene(s):
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−
*** [[EF0434]]
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** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[RMK]]
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** 1 associated gene(s):
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−
*** [[EF0433]]
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** 3 reconstruction source(s) associated:
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−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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−
*** [[orthology-l_plantarum_wcfs1]]
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* [[RMPA]]
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** 1 associated gene(s):
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−
*** [[EF0435]]
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** 2 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[RPI]]
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** 3 associated gene(s):
+
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*** [[EF0197]]
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*** [[EF1835]]
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*** [[EF1834]]
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** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
+
−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[SBTD_D2]]
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** 1 associated gene(s):
+
−
*** [[EF1826]]
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** 1 reconstruction source(s) associated:
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−
*** [[orthology-l_plantarum_wcfs1]]
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* [[SBTD_L]]
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** 1 associated gene(s):
+
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*** [[EF1826]]
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** 1 reconstruction source(s) associated:
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−
*** [[orthology-l_plantarum_wcfs1]]
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* [[SBTPD]]
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** 1 associated gene(s):
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*** [[EF3310]]
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** 1 reconstruction source(s) associated:
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−
*** [[orthology-l_plantarum_wcfs1]]
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* [[TPI]]
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** 1 associated gene(s):
+
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*** [[EF1962]]
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** 3 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[XYLI1]]
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** 1 associated gene(s):
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*** [[EF0556]]
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** 2 reconstruction source(s) associated:
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−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[XYLI2]]
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** 1 associated gene(s):
+
−
*** [[EF0556]]
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−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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−
*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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−
== Reaction(s) not found ==
+
−
* [http://bigg.ucsd.edu/universal/reactions/ABFPT ABFPT]
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* [http://bigg.ucsd.edu/universal/reactions/ABFPTh ABFPTh]
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* [http://bigg.ucsd.edu/universal/reactions/ABTDG ABTDG]
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* [http://bigg.ucsd.edu/universal/reactions/ADPGLC ADPGLC]
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* [http://bigg.ucsd.edu/universal/reactions/ADPMAN ADPMAN]
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* [http://bigg.ucsd.edu/universal/reactions/AF1PT AF1PT]
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* [http://bigg.ucsd.edu/universal/reactions/AGAKI AGAKI]
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* [http://bigg.ucsd.edu/universal/reactions/ALCD22_L ALCD22_L]
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* [http://bigg.ucsd.edu/universal/reactions/ALLK ALLK]
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* [http://bigg.ucsd.edu/universal/reactions/AM6PTh AM6PTh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ARABR ARABR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BFBP BFBP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BFBPh BFBPh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/F1PGT F1PGT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FBA3 FBA3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FBA3hi FBA3hi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FBA4 FBA4]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FBAf FBAf]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FBAh FBAh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FBAm FBAm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FCI FCI]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FCLK FCLK]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FCLPA FCLPA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FK FK]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FPGPL FPGPL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GALOR GALOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GFUCS GFUCS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GMAND GMAND]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GOFUCR GOFUCR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HEX4 HEX4]
+
−
* [http://bigg.ucsd.edu/universal/reactions/KHK KHK]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MAN1PT MAN1PT]
+
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* [http://bigg.ucsd.edu/universal/reactions/MAN1PT2 MAN1PT2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MNLDH2 MNLDH2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MPAKI MPAKI]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PFK_ppi PFK_ppi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PFKh PFKh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RPIh RPIh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SBTRh SBTRh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TPIh TPIh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TRIOK TRIOK]
+
 
== External links  ==
 
== External links  ==
−
{{#set: common_name=Fructose and mannose metabolism}}
+
* RHEA:
−
{{#set: reaction found=22}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17785 17785]
−
{{#set: total reaction=63}}
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* EC Number : 4.1.1.15
−
{{#set: completion rate=35.0}}
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* MetaNetX (MNX) Equation : MNXR95942
 +
* KEGG Reaction : R00261
 +
* BioCyc : META:GLUTDECARBOX-RXN
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Glutamate Decarboxylase}}
 +
{{#set: in pathway=map01100|map01110|map01120|map00650|map00430|map00250|map00410}}
 +
{{#set: reconstruction category=gap-filling}}
 +
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
 +
{{#set: reconstruction tool=meneco}}
 +
{{#set: reconstruction comment=added for gapfilling}}

Latest revision as of 15:24, 21 March 2018

Reaction GLUDC

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glutamate Decarboxylase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H+[c] + 1.0 L-Glutamate[c] => 1.0 4-Aminobutanoate[c] + 1.0 CO2 CO2[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 4.1.1.15
  • MetaNetX (MNX) Equation : MNXR95942
  • KEGG Reaction : R00261
  • BioCyc : META:GLUTDECARBOX-RXN




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