Difference between revisions of "MECDPS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TKT2 TKT2] == * direction: ** REVERSIBLE * common name: ** Transketolase * Synonym(s): == Reaction...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MECDPS MECDPS] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-C-methyl-D-erythritol 2,4-cyclo...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/TKT2 TKT2] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/MECDPS MECDPS] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Transketolase
+
** 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[xu5p__D]][c] '''+''' 1.0 [[e4p]][c] '''<=>''' 1.0 [[g3p]][c] '''+''' 1.0 [[f6p]][c]
+
** 1.0 [[2p4c2me]][c] '''=>''' 1.0 [[2mecdp]][c] '''+''' 1.0 [[cmp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 D-Xylulose 5-phosphate[c] '''+''' 1.0 D-Erythrose 4-phosphate[c] '''<=>''' 1.0 Glyceraldehyde 3-phosphate[c] '''+''' 1.0 D-Fructose 6-phosphate[c]
+
** 1.0 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''=>''' 1.0 2-C-methyl-D-erythritol 2,4-cyclodiphosphate[c] '''+''' 1.0 CMP C9H12N3O8P[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[EF0042]]
 +
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
 
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 
−
** '''104''' reactions found over '''715''' reactions in the full pathway
 
−
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 
−
** '''45''' reactions found over '''220''' reactions in the full pathway
 
−
* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
 
−
** '''16''' reactions found over '''71''' reactions in the full pathway
 
−
* [[map01051]]: [http://www.genome.jp/dbget-bin/www_bget?map01051 map01051]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
** '''135''' reactions found over '''694''' reactions in the full pathway
 
** '''135''' reactions found over '''694''' reactions in the full pathway
−
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
+
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
** '''26''' reactions found over '''69''' reactions in the full pathway
+
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00900]]: [http://www.genome.jp/dbget-bin/www_bget?map00900 map00900]
 +
** '''14''' reactions found over '''67''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[gap-filling]]
+
* Category: [[orthology]]
−
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
−
*** Tool: [[meneco]]
+
*** Tool: [[pantograph]]
−
**** Comment: [[added for gapfilling]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27626 27626]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23864 23864]
−
* EC Number : 2.2.1.1
+
* BioCyc : META:RXN0-302
−
* MetaNetX (MNX) Equation : MNXR104869
+
* MetaNetX (MNX) Equation : MNXR101424
−
* KEGG Reaction : R01830
+
* KEGG Reaction : R05637
−
* BioCyc : META:2TRANSKETO-RXN
+
* EC Number : 4.6.1.12
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Transketolase}}
+
{{#set: common name=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase}}
−
{{#set: in pathway=map01100|map01110|map01120|map01200|map00710|map01051|map01130|map00030}}
+
{{#set: gene associated=EF0042}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: in pathway=map01100|map01130|map01110|map00900}}
−
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:25, 21 March 2018

Reaction MECDPS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] => 1.0 2-C-methyl-D-erythritol 2,4-cyclodiphosphate[c] + 1.0 CMP C9H12N3O8P[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:RXN0-302
  • MetaNetX (MNX) Equation : MNXR101424
  • KEGG Reaction : R05637
  • EC Number : 4.6.1.12




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