Difference between revisions of "DMBZIDS2"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CYSabc2pppe CYSabc2pppe] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * W...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DMBZIDS2 DMBZIDS2] == * direction: ** LEFT-TO-RIGHT * common name: ** 5,6-dimethylbenzimidazole syn...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/CYSabc2pppe CYSabc2pppe] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/DMBZIDS2 DMBZIDS2] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** 5,6-dimethylbenzimidazole synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[h2o]][c] '''+''' 1.0 [[atp]][c] '''+''' 1.0 [[cys__L]][c] '''=>''' 1.0 [[h]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[pi]][c] '''+''' 1.0 [[cys__L]][e]
+
** 1.0 [[o2]][c] '''+''' 1.0 [[fmnh2]][c] '''+''' 1.0 [[nadh]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[dialurate]][c] '''+''' 1.0 [[nad]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[e4p]][c] '''+''' 1.0 [[dmbzid]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 H2O H2O[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 L-Cysteine[c] '''=>''' 1.0 H+[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 Phosphate[c] '''+''' 1.0 L-Cysteine[e]
+
** 1.0 O2 O2[c] '''+''' 1.0 Reduced FMN[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 H+[c] '''=>''' 1.0 Dialurate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 D-Erythrose 4-phosphate[c] '''+''' 1.0 5,6-Dimethylbenzimidazole[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
Genes have been associated with this reaction based on different elements listed below.
 
* [[EF2058]]
 
** 1_new_rxn_for_biomass
 
* [[EF2059]]
 
** 1_new_rxn_for_biomass
 
 
== Pathways  ==
 
== Pathways  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* Category: [[manual]]
+
* Category: [[gap-filling]]
** Source: [[manual-1_new_rxn_for_biomass]]
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
*** Comment: [[this was a reaction occurring in the perisplasm of e. coli]]
+
*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: gene associated=EF2058|EF2059}}
+
{{#set: common name=5,6-dimethylbenzimidazole synthase}}
 
{{#set: in pathway=}}
 
{{#set: in pathway=}}
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=gap-filling}}
{{#set: reconstruction source=manual-1_new_rxn_for_biomass}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
{{#set: reconstruction comment=this was a reaction occurring in the perisplasm of e. coli}}
+
{{#set: reconstruction tool=meneco}}
 +
{{#set: reconstruction comment=added for gapfilling}}

Latest revision as of 16:26, 21 March 2018

Reaction DMBZIDS2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5,6-dimethylbenzimidazole synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 O2 O2[c] + 1.0 Reduced FMN[c] + 1.0 Nicotinamide adenine dinucleotide - reduced[c] + 1.0 H+[c] => 1.0 Dialurate[c] + 1.0 Nicotinamide adenine dinucleotide[c] + 1.0 H2O H2O[c] + 1.0 D-Erythrose 4-phosphate[c] + 1.0 5,6-Dimethylbenzimidazole[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links