Difference between revisions of "CSND"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ALLTAMH ALLTAMH] == * direction: ** LEFT-TO-RIGHT * common name: ** Allantoate amidohydrolase * Syn...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CSND CSND] == * direction: ** LEFT-TO-RIGHT * common name: ** Cytosine deaminase * Synonym(s): ==...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/ALLTAMH ALLTAMH] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/CSND CSND] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** Allantoate amidohydrolase
+
** Cytosine deaminase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[alltt]][c] '''+''' 2.0 [[h2o]][c] '''+''' 2.0 [[h]][c] '''=>''' 1.0 [[urdglyc]][c] '''+''' 1.0 [[co2]][c] '''+''' 2.0 [[nh4]][c]
+
** 1.0 [[csn]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[nh4]][c] '''+''' 1.0 [[ura]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 Allantoate[c] '''+''' 2.0 H2O H2O[c] '''+''' 2.0 H+[c] '''=>''' 1.0 (-)-Ureidoglycolate[c] '''+''' 1.0 CO2 CO2[c] '''+''' 2.0 Ammonium[c]
+
** 1.0 Cytosine[c] '''+''' 1.0 H+[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Ammonium[c] '''+''' 1.0 Uracil[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[EF2997]]
+
* Gene: [[EF0390]]
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
* Gene: [[EF2206]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 
== Pathways  ==
 
== Pathways  ==
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
** '''97''' reactions found over '''298''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
** '''104''' reactions found over '''715''' reactions in the full pathway
+
** '''82''' reactions found over '''244''' reactions in the full pathway
 +
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
 +
** '''22''' reactions found over '''149''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32279 32279]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20605 20605]
* MetaNetX (MNX) Equation : MNXR95768
+
* BioCyc : META:CYTDEAM-RXN
* EC Number : 3.5.3.9
+
* MetaNetX (MNX) Equation : MNXR96927
 +
* KEGG Reaction : R00974
 +
* EC Number : 3.5.4.1
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=Allantoate amidohydrolase}}
+
{{#set: common name=Cytosine deaminase}}
{{#set: gene associated=EF2997}}
+
{{#set: gene associated=EF0390|EF2206}}
{{#set: in pathway=map00230|map01120}}
+
{{#set: in pathway=map01100|map00240|map00330}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655}}
+
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:31, 21 March 2018

Reaction CSND

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Cytosine deaminase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Cytosine[c] + 1.0 H+[c] + 1.0 H2O H2O[c] => 1.0 Ammonium[c] + 1.0 Uracil[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:CYTDEAM-RXN
  • MetaNetX (MNX) Equation : MNXR96927
  • KEGG Reaction : R00974
  • EC Number : 3.5.4.1